BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0014.p (329 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313933|ref|YP_003778025.1| branched-chain amino acid ABC t... 149 4e-37 gi|300314069|ref|YP_003778161.1| amino acid ABC transporter perm... 138 7e-34 gi|300312953|ref|YP_003777045.1| amino acid ABC transporter perm... 127 8e-31 gi|300311771|ref|YP_003775863.1| branched-chain amino acid ABC t... 114 1e-26 gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC t... 112 6e-26 >gi|300313933|ref|YP_003778025.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 334 Score = 149 bits (375), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 107/286 (37%), Positives = 160/286 (55%), Gaps = 6/286 (2%) Query: 32 STDVVIYAIAAMGLNLLVGYTGLTSFGHGAWFGVGAYAAALSQKYWFPGQIVAPMLFTIA 91 +T+V+++A+AA+G NLL+GYTGL SFG G +FGVG+Y A + + A L + Sbjct: 30 ATEVLVFALAALGCNLLLGYTGLMSFGQGIFFGVGSYTAGVVLLQLKLALLPALALAALG 89 Query: 92 FIAVSAAIVGFLILRRRGVYFSLLTLALSALTFAIAFRWTDFTGGESGLGNVVRPVVA-- 149 V+ + F I R+RG YF +LTLA + + + +A+ D TGG++GL ++ RP +A Sbjct: 90 GALVALLVGWFSI-RQRGTYFVMLTLAFAQMFYFLAYTMKDVTGGDNGLLDIPRPPLALF 148 Query: 150 GIDL---DQSIPFLVFVSVIALIVLYVLQRVIRSPFGHTIVAIRENEQRARFQGYSTIVY 206 G+ L S + V+++ ++V ++LQRV+ S G T++A+RENE RA GY + Sbjct: 149 GLTLLPTTSSWQYYTVVAILFVLVFWLLQRVVDSVLGKTLLAVRENEARASALGYDVRLL 208 Query: 207 KLIMFIVSASVTGLAGALLAFHHRFASAEPTSVAFSGELLAMVVIGGMRSFLGPALGALF 266 KL F++S +VTGLAG L A A S +L M VIGG + LGA F Sbjct: 209 KLAAFVISGAVTGLAGGLHAMMTGVAPLSNIEYHTSEAILVMTVIGGTGNLFASVLGASF 268 Query: 267 YILFRECLSIWTENWLLWFGLAFVGFILFSPTGLVGIWQLIKNRLR 312 Y+L LS WL+ GL + L+ GL G+ I + +R Sbjct: 269 YVLVGNWLSTLWPRWLMLLGLLLIAVSLYMQKGLFGLAMKIIDAVR 314 >gi|300314069|ref|YP_003778161.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 326 Score = 138 bits (347), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 91/247 (36%), Positives = 139/247 (56%), Gaps = 11/247 (4%) Query: 34 DVVIYAIAAMGLNLLVGYTGLTSFGHGAWFGVGAYAAALSQKYW-FP---GQIVAPMLFT 89 ++ +A+ A NLL+GYTGL SFGH A+ G Y + K W P G I+ + T Sbjct: 28 KMLCFALFACAFNLLIGYTGLLSFGHAAFLGWAGYMCGQALKVWGLPTELGLIIGTL--T 85 Query: 90 IAFIAVSAAIVGFLILRRRGVYFSLLTLALSALTFAIAFRWTDFTGGESGLGNVVRPVVA 149 A I + ++G L +RR+G+YF+++TLAL+ + F +A + FTGGE GL V R + Sbjct: 86 GALIGL---VMGLLAIRRQGIYFTMITLALAQMLFFVALQ-APFTGGEDGLQGVPRGKLL 141 Query: 150 G-IDLDQSIPFLVFVSVIALIVLYVLQRVIRSPFGHTIVAIRENEQRARFQGYSTIVYKL 208 G ++L+ + V IA+ ++ R I SPFG + AI+ENE RA GY YKL Sbjct: 142 GFLNLESDMTLYYVVLAIAVAGFALIVRTIHSPFGQVLKAIKENEPRAISLGYDVARYKL 201 Query: 209 IMFIVSASVTGLAGALLAFHHRFASAEPTSVAFSGELLAMVVIGGMRSFLGPALGALFYI 268 + F++SA ++GLAGA F + + SG ++ M ++GG+ + LGP +GA+ I Sbjct: 202 LAFVLSAGLSGLAGATKTLVLGFETLTDVHWSMSGLVVLMTLVGGLGTILGPIVGAVIII 261 Query: 269 LFRECLS 275 + L Sbjct: 262 MLENKLG 268 >gi|300312953|ref|YP_003777045.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 317 Score = 127 bits (320), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 104/287 (36%), Positives = 169/287 (58%), Gaps = 18/287 (6%) Query: 33 TDVVIYAIAAMGLNLLVGYTGLTSFGHGAWFGVGAYAAALSQKYWFPGQIVAPMLFTIAF 92 T ++I+A+ A LN ++GY G+ SFGH +FG+GAY A++ F G A +++ +A Sbjct: 33 TRILIFAMVAASLNFILGYGGMVSFGHAVFFGLGAYVTAIAS---FHGVTSAWLIWLLAA 89 Query: 93 I--AVSAAIVGFLILRRRGVYFSLLTLALSAL--TFAIAFRWTDFTGGESGLGNVVRPVV 148 + A+ ++G + LR R VYF ++T+AL+ L F + FR + GG+ GL RP++ Sbjct: 90 LVTALVGLVIGVIALRTRAVYFIMITMALAQLFYYFFVGFR---YYGGDDGLQVTARPLL 146 Query: 149 A-GIDL--DQSIPFLVFVSVIALIVLYVLQRVIRSPFGHTIVAIRENEQRARFQGYSTIV 205 G+D+ D + ++V + A +L LQR++ S FG + AIR+NE+RA+ GY + Sbjct: 147 GFGLDMSGDNAFYWVVLAWLAASFIL--LQRLLASRFGLALNAIRQNERRAQAIGYPALR 204 Query: 206 YKLIMFIVSASVTGLAGALLAFHHRFASAEPTSVAFSGELLAMVVIGGMRSFLGPALGAL 265 YKL F+++A + G+AG+L+ + FAS + + SG LL MV +GG+ F G LGA Sbjct: 205 YKLAAFVIAAVIAGIAGSLIGMSNLFASPKLLHWSQSGILLVMVALGGVGYFYGGLLGAA 264 Query: 266 FYILFRECLSIWTENWLLWFGLAFVGFILFSPTG---LVGIWQLIKN 309 ++L E LS E W ++ GL + ++ +P G LV I + +K Sbjct: 265 AFLLLEEVLSTHFEYWQIYVGLILLLVVMVAPRGVSSLVSIGKTLKQ 311 >gi|300311771|ref|YP_003775863.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 628 Score = 114 bits (285), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 135/249 (54%), Gaps = 7/249 (2%) Query: 34 DVVIYAIAAMGLNLLVGYTGLTSFGHGAWFGVGAYAAAL-SQKYWFPGQIVAPMLFTIAF 92 ++++ + A L+ L+G G+ SFGH A+FG+GAYAAAL + + +P + ML Sbjct: 353 EILVAVLFAASLHFLMGPGGMVSFGHAAYFGLGAYAAALVTLRLQWPMPLA--MLAGAGT 410 Query: 93 IAVSAAIVGFLILRRRGVYFSLLTLALSALTFAIAFRWTDFTGGESGLGNVVRPVVAGID 152 ++A + G+ +R GVY ++LTLA + + +A ++W D TGG +GL + R A Sbjct: 411 AMLAALLFGWFCVRLSGVYLAMLTLAFAQIVWAAIYQWDDLTGGSNGLVGL-RTAAA--- 466 Query: 153 LDQSIPFLVFVSVIALIVLYVLQRVIRSPFGHTIVAIRENEQRARFQGYSTIVYKLIMFI 212 L + + + + + +Y+L+RVI +PFG + A R+ RA+ G + F Sbjct: 467 LASPLAYYYLALLCSALGVYLLRRVIHAPFGLALRAARDASGRAQALGMDVRALQWGGFA 526 Query: 213 VSASVTGLAGALLAFHHRFASAEPTSVAFSGELLAMVVIGGMRSFLGPALGALFYILFRE 272 ++ GLAG L AF S E V S + L MV++GG++S GP LGA + ++ Sbjct: 527 LAGLFCGLAGVLFAFSKGSISPEVAGVNRSVDGLVMVLLGGVQSLAGPLLGASVFTWLQD 586 Query: 273 CLSIWTENW 281 ++ T+ W Sbjct: 587 LVARETDYW 595 >gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 655 Score = 112 bits (279), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 128/242 (52%), Gaps = 5/242 (2%) Query: 35 VVIYAIAAMGLNLLVGYTGLTSFGHGAWFGVGAYAAA-LSQKYWFPGQIVAPMLFTIAFI 93 ++IYAI GL+++VGYTG S GH FG+G+YAA L K P + P IA Sbjct: 35 ILIYAILLFGLDIVVGYTGQVSLGHAGLFGIGSYAAGVLFFKLGMPIFVTVPA--AIAVT 92 Query: 94 AVSAAIVGFLILRRRGVYFSLLTLALSALTFAIAFRWTDFTGGESGLGNVVRPVVAGIDL 153 AV AI+ LR G Y +++TLA + + T T G G+ + +P++ G D Sbjct: 93 AVFGAILALPALRVTGPYLAMVTLAFGTIIQILINEMTFLTEGPLGI-KLQKPMIGG-DK 150 Query: 154 DQSIPFLVFVSVIALIVLYVLQRVIRSPFGHTIVAIRENEQRARFQGYSTIVYKLIMFIV 213 + F V+V+ ++ + V+ R+++S G A+R++ + G S YK+ FI+ Sbjct: 151 MSEVQFFYLVAVLMVLSMLVVHRILKSNLGRAFQALRDSPIASDCMGVSVYRYKVYAFII 210 Query: 214 SASVTGLAGALLAFHHRFASAEPTSVAFSGELLAMVVIGGMRSFLGPALGALFYILFREC 273 SA++ GL+GAL A+ + S + + L V++GG +S +G +GAL ++ Sbjct: 211 SAALAGLSGALYAYSEEYISPNTYNFELTIMFLLAVIMGGRKSRIGSLIGALIVVMLPSL 270 Query: 274 LS 275 LS Sbjct: 271 LS 272 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.330 0.143 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,036,563 Number of extensions: 42772 Number of successful extensions: 297 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 265 Number of HSP's successfully gapped: 21 Length of query: 329 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 243 Effective length of database: 1,212,660 Effective search space: 294676380 Effective search space used: 294676380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)