BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0013.p (291 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313932|ref|YP_003778024.1| branched-chain amino acid ABC t... 184 9e-48 gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC t... 180 1e-46 gi|300312954|ref|YP_003777046.1| amino acid ABC transporter perm... 159 3e-40 gi|300311946|ref|YP_003776038.1| branched-chain amino acid ABC t... 114 1e-26 gi|300311563|ref|YP_003775655.1| branched-chain amino acid ABC t... 111 6e-26 >gi|300313932|ref|YP_003778024.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 288 Score = 184 bits (466), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 115/280 (41%), Positives = 170/280 (60%), Gaps = 1/280 (0%) Query: 7 LEQILNGLLVGGYYLLIALGLSLIFSLGGVVNLAHGAFYAIGAYLAVEITKY-LGFTGAL 65 L QI NG+ +G Y L+A+GLS++F L VN +HGAF+ +GAYL ++T LGF +L Sbjct: 5 LLQIANGVGIGMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYLCFQVTDLGLGFWWSL 64 Query: 66 IISPLLVALIGILFERFLLRRFYSADPILGLLLTFGLAMVAEQVIRIFWGASPLPASIPP 125 +I+PL+V L + ERF+LR Y+ +L T G+A+V ++ + WG + P Sbjct: 65 LIAPLVVGLFAWIVERFVLRHVYALPHHFHILFTVGMALVIQEAVISTWGPLGNNVAPPD 124 Query: 126 ALKGQIMVGDFMYSKYRLLMLAAVIVALALIWILLNKTSFGRVVRAGVQKPDMVAVLGIK 185 L+G +M G F+Y KYRL ++ V L+W +L T G +VRAG + +MV++LG+ Sbjct: 125 LLQGVVMWGGFVYPKYRLFVIGLTAVMALLLWWVLEGTRLGSIVRAGSESTEMVSLLGLN 184 Query: 186 LHPYMTAIVMLGVGLAALAGVLFAPISGVHPAMGAEIMTAAFVVVVIGGLGSFWGVVLAA 245 ++ + + LG A LAG L API G P MG E + AFVVVVIGGLGSFWG ++ Sbjct: 185 INRIFSLVFALGAATAGLAGALAAPIRGADPFMGVEALGIAFVVVVIGGLGSFWGALIGG 244 Query: 246 LLVGVVRGITIQFYAPAGEASMYLLMLLVLIFRPRGLLGE 285 +LVG+V+ + ++ +Y+ M V++ RP GLLG Sbjct: 245 ILVGIVQSVMSTVWSEGAHLMIYVAMAAVMLLRPNGLLGR 284 >gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 294 Score = 180 bits (457), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 104/272 (38%), Positives = 159/272 (58%), Gaps = 2/272 (0%) Query: 17 GGYYLLIALGLSLIFSLGGVVNLAHGAFYAIGAYLAVEITKYLGFTG--ALIISPLLVAL 74 G +Y +++LGL++IF L V+N AHG Y +GA+LA YLG LI++P+LV Sbjct: 22 GSFYAMLSLGLAVIFGLLNVINFAHGTLYMLGAFLAWMGLSYLGLNYWVMLIVAPILVGA 81 Query: 75 IGILFERFLLRRFYSADPILGLLLTFGLAMVAEQVIRIFWGASPLPASIPPALKGQIMVG 134 GI+ E+ +LR Y D + GLLLTFG+ ++ E + R +G S P S+P L+G +G Sbjct: 82 FGIVIEKTMLRWLYKLDHLYGLLLTFGITLMIEGIFRSIYGVSGQPYSVPDLLQGATNLG 141 Query: 135 DFMYSKYRLLMLAAVIVALALIWILLNKTSFGRVVRAGVQKPDMVAVLGIKLHPYMTAIV 194 + YR ++ A ++ W ++ KT G +RAG + P +V GI + +T Sbjct: 142 FMVLPNYRAWVVVASLIVCFATWFVIEKTRLGAYLRAGTENPKLVEAFGINVPLMVTLTY 201 Query: 195 MLGVGLAALAGVLFAPISGVHPAMGAEIMTAAFVVVVIGGLGSFWGVVLAALLVGVVRGI 254 GV LAA AGVL AP+ V P MG+ ++ F VVVIGG+GS G ++ L++G++ G+ Sbjct: 202 GFGVALAAFAGVLAAPVIQVSPLMGSNLIITVFAVVVIGGMGSILGSIITGLVLGLIEGL 261 Query: 255 TIQFYAPAGEASMYLLMLLVLIFRPRGLLGER 286 T FY ++++M +VL+ RP GL G+ Sbjct: 262 TRVFYPELSATVVFIIMAIVLMVRPAGLFGKE 293 >gi|300312954|ref|YP_003777046.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 304 Score = 159 bits (402), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 120/301 (39%), Positives = 169/301 (56%), Gaps = 22/301 (7%) Query: 6 LLEQILNGLLVGGYYLLIALGLSLIFSLGGVVNLAHGAFYAIGAYLAVEITKYLG--FTG 63 + EQ+LN L G LIA GL+LIF + VNLAHG+F+ IGAY+A + G + G Sbjct: 5 IFEQVLNSLQFGVMLFLIASGLTLIFGVMNFVNLAHGSFFMIGAYVAAVVAGASGSFWLG 64 Query: 64 ALIISPLLVALIGILFERFLLRRFYSADPILGLLLTFGLAMVAEQVIRIFWGASPLPASI 123 L+ P AL G L E + RR Y D ++ +L TF ++ +R+ WG PLP ++ Sbjct: 65 LLVALPATAAL-GFLLEWVVFRRLYQKDHMVQVLATFAFILIFNDGVRMIWGPQPLPLNM 123 Query: 124 PPALKGQIMVGDFMYSKYRLLMLA-AVIVALALIWILLNKTSFGRVVRAGVQKPDMVAVL 182 P A G + + YS YRLL++A V+VA+AL + L+N+T G VRAG +MV + Sbjct: 124 PAAFAGPVNLFGLPYSSYRLLVMAVGVVVAIAL-YFLINRTRIGMWVRAGANNLEMVTAM 182 Query: 183 GIKLHPYMTAIVMLGVGLAALAGVLFAPISGVHPAMGAEIMTAAFVVVVIGGLGSFWGVV 242 GI + + G+ LAALAG++ P+ V MG +++ AFVVVVIGG+GS G Sbjct: 183 GINIRLLFRLVFSFGLLLAALAGIMLGPLVAVQAGMGDDVLILAFVVVVIGGIGSVPGAA 242 Query: 243 LAALLVGVV----RGITIQFYA------------PA-GEASMYLLMLLVLIFRPRGLLGE 285 + AL+VGVV R + Q +A PA G +YL+M+ VL +RP GL Sbjct: 243 IGALIVGVVDTLGRSLLPQLFALFLSADAAASVGPALGSMMIYLVMIAVLFWRPSGLFPA 302 Query: 286 R 286 R Sbjct: 303 R 303 >gi|300311946|ref|YP_003776038.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 114 bits (284), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 93/295 (31%), Positives = 145/295 (49%), Gaps = 17/295 (5%) Query: 9 QILNGLLVGGYYLLIALGLSLIFSLGGVVNLAHGAFYAIGAYLAVEITKYLGFTGALIIS 68 Q NGL V LL+ALGL++IF GV+N+AHG F IGAY+ ++ +L T A + Sbjct: 2 QGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLS-HLTTTYAPALQ 60 Query: 69 PL--LVALI---------GILFERFLLRRFYSADPILGLLLTFGLAMVAEQVIRIFWGAS 117 P VA++ G L E L+ R Y P+ LL T+GL++ +Q R +GA Sbjct: 61 PFYFFVAIVLSFAVAYGVGYLTELLLISRLYK-RPLDTLLATWGLSLAMQQTFRSIFGAK 119 Query: 118 PLPASIPPALKGQIM-VGDFMYSKYRLLMLAAVIVALALIWILLNKTSFGRVVRAGVQKP 176 + A++P L G D L M+ ++ I++LL ++ +G VRA +Q Sbjct: 120 EVSATLPDWLMGSFKPTDDIDIPLNGLFMMGLTVLLTGAIFVLLFRSRWGLQVRATMQNR 179 Query: 177 DMVAVLGIKLHPYMTAIVMLGVGLAALAGVLFAPISGVHPAMGAEIMTAAFVVVVIGGLG 236 M +GI LG G+A +AG F I P G+ + F+VVV GG Sbjct: 180 VMSGAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVDTFLVVVFGGAQ 239 Query: 237 SFWGVVLAALLVGVVRGITIQFYAPAGEASMYLL--MLLVLIFRPRGLLGERIER 289 S G + +A + + T +F+ A + L ++L+L+ RP+GL ++ + Sbjct: 240 SLIGTIASAFSIAQTQS-TAEFFLTGSMAKVLTLSAVILILMLRPQGLFSVKVRK 293 >gi|300311563|ref|YP_003775655.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 311 Score = 111 bits (278), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 101/287 (35%), Positives = 155/287 (54%), Gaps = 31/287 (10%) Query: 28 SLIFSLGGVVNLAHGAFYAIGAYLAVEITKYLGFTGALIISPLLVALIGILFERFLLRRF 87 +LI+S+ GV N AH +FY +GAY+A I LGF AL+I+PL+V + G L E + LR Sbjct: 26 TLIYSMMGVPNFAHASFYMLGAYVAYAIAGVLGFWPALLIAPLVVGVAGALVEHYGLRIV 85 Query: 88 YSADPILGLLLTFGLAMVAEQVIRIFWGASPLPASIPPALKGQIMVGDFMYSK----YRL 143 + + LL TFGL+ + +++++ WG SP+P IPPAL G + +Y+ YR Sbjct: 86 HRYGHVPELLFTFGLSYLVVELVQLVWGRSPVPYRIPPALDGTLFT---LYTTAFPVYRG 142 Query: 144 LMLAAVIVALALIWILLNKTSFGRVVRAGVQKPDMVAVLGIKLHPYMTAIVMLGVGLAAL 203 ML + L +W+LL T G V++A + P MV LG + + G LAAL Sbjct: 143 FMLLVAALMLLALWLLLRHTRIGLVIQAALTHPQMVEALGHNVPRVFMLVFGGGCALAAL 202 Query: 204 AGVLFAPISGVHPAMGAEIMTAAFVVVVIGGLGSFWGVVLAALLVGVVRGITIQFYAP-- 261 AGV+ P M A + + FVVVV+GGLGS G + +LL+G+++ + Sbjct: 203 AGVIGGNAFVTEPGMAAAVGSIIFVVVVVGGLGSLAGAFITSLLIGMMQTFAVALDVSLA 262 Query: 262 ------AGEASM----------------YLLMLLVLIFRPRGLLGER 286 A ++++ YLL++++LI RP+GL+G+R Sbjct: 263 SLGLSVAPDSALAPLLRLTLAQVAPVLPYLLLVVMLIVRPKGLMGQR 309 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.332 0.149 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 620,377 Number of extensions: 19858 Number of successful extensions: 216 Number of sequences better than 1.0e-08: 26 Number of HSP's gapped: 187 Number of HSP's successfully gapped: 26 Length of query: 291 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 207 Effective length of database: 1,222,130 Effective search space: 252980910 Effective search space used: 252980910 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)