BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0012.p (294 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310916|ref|YP_003775008.1| phospholipase C protein [Herbas... 121 8e-29 gi|300309490|ref|YP_003773582.1| branched-chain amino acid ABC t... 72 5e-14 gi|300312339|ref|YP_003776431.1| branched-chain amino acid ABC t... 66 4e-12 gi|300314071|ref|YP_003778163.1| amino acid ABC transporter peri... 60 2e-10 gi|300313931|ref|YP_003778023.1| branched-chain amino acid ABC t... 58 9e-10 >gi|300310916|ref|YP_003775008.1| phospholipase C protein [Herbaspirillum seropedicae SmR1] Length = 558 Score = 121 bits (303), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 51/82 (62%), Positives = 70/82 (85%) Query: 1 MLIVVTYDENGGFWDHAAPPKADKWGPGTRIPAIIVSPYAKKGYVDNSLYDTSSVLRFIT 60 M++VVT+DENGG+WDH APPK D+WGPGTR+PA++VSP+A+KG VD+++YDT+S+LR IT Sbjct: 462 MVVVVTFDENGGWWDHVAPPKGDRWGPGTRVPALVVSPFARKGTVDHTVYDTASILRLIT 521 Query: 61 RRWSLPVLDGIALRDKAIQANG 82 R + L LDG+ RD+A+ A G Sbjct: 522 RTFDLEKLDGLKQRDEAMIARG 543 >gi|300309490|ref|YP_003773582.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 72.4 bits (176), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 66/261 (25%), Positives = 116/261 (44%), Gaps = 25/261 (9%) Query: 50 YDTSSVLR----FITRR----WSLPVLD---GIALR---DKAIQANGGTIANDELVPTDA 95 YDT+++ R ITR+ W D G +L + +++NGG + VP Sbjct: 150 YDTTALARGTGAAITRQGGKSWYFLTADYAFGTSLEKDTSEVVKSNGGNVVGATRVPLAT 209 Query: 96 TDFSPYLLKIRQAKPDLVISNLAGNQITNFIKQYSEFGL--PFPIAGFGFDTAVAWGAGA 153 +DFS +LL+ + +K ++ +AG + N IK +EFG+ +AG G Sbjct: 210 SDFSSFLLQAQSSKAQILGLAVAGGDVINAIKAANEFGVNKTMKLAGLLIFINDTHSLGL 269 Query: 154 DSFAGTWPTT-WHHDVNAPSAKAFVAAFTKKFGKPPENQAWGEYVAFRSIVQAITETKTL 212 G + T W+ D+N +A+ + K K P G+ A ++A+ + Sbjct: 270 SLTQGMYLTDGWYWDLN-DQTRAWANRYFMKMKKMPSMFQAGDASAVGQYLKAVKAVGST 328 Query: 213 DTAKLIDYFEKGAQVDVLKARKGVYRAWDHQLLQEMYTVTPKPKAQVKDKWDFMLLGSSV 272 D K++DY K +++ GV R D +++ +MY + K ++ K WD+ L ++ Sbjct: 329 DADKVMDYLRKN-RINDFFTSNGVVRP-DGRMVHDMYLMEVKKPSESKRPWDYYKLVQTI 386 Query: 273 PGPNESLEILAPTMQENACTF 293 PG + T E+ C Sbjct: 387 PGEQAYM-----TKAESKCAL 402 >gi|300312339|ref|YP_003776431.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 65.9 bits (159), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 11/202 (5%) Query: 78 IQANGGTIANDELVPTDATDFSPYLLKIRQAKPDLVISNLAGNQITNFIKQYSEFGLPFP 137 ++A+GGT+ P ++D S +LL+ + +K ++ AG N IK EFG+ Sbjct: 192 VKASGGTVVGSIKHPPQSSDLSSFLLQAQASKAQILGLANAGEDTVNSIKAAKEFGVTKT 251 Query: 138 IAGFGFDTAV----AWG-AGADSFAGTWPTTWHHDVNAPSAKAFVAAFTKKFGKPPENQA 192 + G + A G A A+ T +W+ D + PS K F F +K K P Sbjct: 252 MKLVGLLMVINDIHALGLANAEGLMMT--DSWYWDKDEPSRK-FAERFFQKMKKMPSTHQ 308 Query: 193 WGEYVAFRSIVQAITETKTLDTAKLIDYFEKGAQVDVLKARKGVYRAWDHQLLQEMYTVT 252 Y A + ++A+ T D+ K++ +K D KG RA D + + +MY Sbjct: 309 AAAYSATTTYLKAVQAIGTDDSTKVMAQLKKTRIDDFY--NKGSIRA-DGRNIHDMYLYQ 365 Query: 253 PKPKAQVKDKWDFMLLGSSVPG 274 K A+ K WD++ L ++PG Sbjct: 366 VKSPAESKKPWDYLKLLETIPG 387 >gi|300314071|ref|YP_003778163.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 402 Score = 60.1 bits (144), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 94/199 (47%), Gaps = 6/199 (3%) Query: 78 IQANGGTIANDELVPTDATDFSPYLLKIRQAKPDLVISNLAGNQITNFIKQYSEFGL--P 135 ++A+GGT+ P A+DFS +LL+ + +K ++ AG N +K +EFG+ Sbjct: 190 VKASGGTVVGAVKHPLGASDFSSFLLQAQSSKAQIIGLANAGGDFINSVKAANEFGITKT 249 Query: 136 FPIAGFGFDTAVAWGAGADSFAGTWPT-TWHHDVNAPSAKAFVAAFTKKFGKPPENQAWG 194 +AG + G + T +W+ D N + +AF + K P + Sbjct: 250 AKLAGLLVFINDVHSLTLKNTEGLYLTDSWYWDANEET-RAFAKRYFAVRKKMPSSLQAA 308 Query: 195 EYVAFRSIVQAITETKTLDTAKLIDYFEKGAQVDVLKARKGVYRAWDHQLLQEMYTVTPK 254 +Y A ++ + E T D+ K++ K A+ + + + G RA D +++ +MY K Sbjct: 309 DYSAALQYLKVVKEIGTDDSDKVMAALRK-AKFNDMYQKNGYLRA-DGRVMHDMYLYQVK 366 Query: 255 PKAQVKDKWDFMLLGSSVP 273 +++ K WD+ L ++P Sbjct: 367 AQSESKYPWDYYKLVQTIP 385 >gi|300313931|ref|YP_003778023.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 397 Score = 58.2 bits (139), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 16/184 (8%) Query: 97 DFSPYLLKIRQAKPDLVISNLAGNQITNFIKQYSEFGLPFPIAGFGFDTAVAWGAGADSF 156 +FS YL AKPD+++ G+Q ++ ++Q FG+ +AW +G + F Sbjct: 207 EFSGYLTNAIAAKPDVLLLLNFGSQSSDTLRQAVSFGMKNNCT-----ILMAWASGLEQF 261 Query: 157 AGT---------WPTTWHHDVNAPSAKAFVAAFTKKFGKPPENQAWGEYVAFRSIVQAIT 207 + + H ++AP K FV P G Y+ + I+ AI Sbjct: 262 ETLGADICDGVYFGAQYWHAIDAPFNKEFVKLVNDNLKIDPNYSLAGSYICTKIILDAII 321 Query: 208 ETKTLDTAKLIDYFEKGAQVDVLKARKGVYRAWDHQLLQEMYTVTPKPKAQVKDKWDFML 267 + + D +I E G + + L + + R DHQ+++ Y + K KA++ +K D+ Sbjct: 322 KANSTDPKAVIAAME-GMKYEGLTGSEEI-RKGDHQVIKNYYLLKGKAKAKMANKNDYAD 379 Query: 268 LGSS 271 + SS Sbjct: 380 IVSS 383 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 932,678 Number of extensions: 37286 Number of successful extensions: 131 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 131 Number of HSP's successfully gapped: 6 Length of query: 294 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 210 Effective length of database: 1,222,130 Effective search space: 256647300 Effective search space used: 256647300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)