BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0011.p
         (392 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310916|ref|YP_003775008.1| phospholipase C protein [Herbas...   179   5e-46

>gi|300310916|ref|YP_003775008.1| phospholipase C protein
           [Herbaspirillum seropedicae SmR1]
          Length = 558

 Score =  179 bits (453), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 95/217 (43%), Positives = 130/217 (59%), Gaps = 13/217 (5%)

Query: 32  CGGNANIAGDDAAVRN-IDTVVVIYAENRGFDTLYGLFPGANG-IPGVNPSSKGAYLPQV 89
            G  A  A  D A+R  + T+VVIYAENR F+ L+  FPG    +  + PS       Q 
Sbjct: 46  SGNPAEAAALDRALREQVKTIVVIYAENRSFNNLFADFPGLEKPLSALKPSD----YQQR 101

Query: 90  DVDGAVLPVLPPTWGGM-----TAPGQSKVITQAQSAGMPNKPFQIDGKDGVALEASVVT 144
           D DG++L  LPP W G+     T  G +    +     +PN P+ + G  G AL   +VT
Sbjct: 102 DRDGSLLKQLPPAWSGVVNQEQTVEGVTYEAGKQYQTNLPNAPYALKGPQGEALPLGLVT 161

Query: 145 RDLVHRFYNNQMQINGGRNDRFATYSDAGGLSMGYYDGS--NMAMWQLAKEYTLADNFFM 202
           RDL H FY NQMQINGG+ND F  ++D+GGL+MG+Y  +  ++ +W +A+E+ L DNFF 
Sbjct: 162 RDLWHVFYQNQMQINGGKNDGFVAWADSGGLTMGHYADTRYHLRLWDVAREFVLCDNFFQ 221

Query: 203 GSFGGSFQNHQYLICACTPQYPNADKSPAKGGISKVE 239
           G+FGGSF NHQYLICA  P YPN   S ++  ++K +
Sbjct: 222 GAFGGSFLNHQYLICATAPYYPNVMNSVSRTQVAKTK 258


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 990,930
Number of extensions: 38835
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 305
Effective length of database: 1,207,925
Effective search space: 368417125
Effective search space used: 368417125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)