BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0010.p
         (419 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313564|ref|YP_003777656.1| cytochrome C551 peroxidase [Her...    81   1e-16

>gi|300313564|ref|YP_003777656.1| cytochrome C551 peroxidase
           [Herbaspirillum seropedicae SmR1]
          Length = 335

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 123/295 (41%), Gaps = 58/295 (19%)

Query: 55  MTALGRTMFFDPSLSGSGQQSCATCHSPEHAFGPPNNLSVQLGGKDMKTAGTRAVPSLRY 114
           M  LG+ +FFDP LS SG  SC +CH+   + G  +NL   +G    +  G    P++  
Sbjct: 43  MVELGKQLFFDPRLSKSGFISCNSCHN--LSMGGTDNLRSSIGHNWQQ--GPINSPTV-- 96

Query: 115 LQNVPPFSEHFHDDDGDDSIDAGPTGGRTWDGRADSAHDQARIPLLSPHEMANASPADVV 174
                              ++A     + WDGRA     QA  P+ +P EMA  S A  V
Sbjct: 97  -------------------LNAKFNAAQFWDGRAADLKAQAGGPVANPKEMA-FSHALAV 136

Query: 175 AKLRRAP-YAAQFRATFGETIFDDDARAFESALMALEVFQESPADFYPYTSKYDAYLR-K 232
             L+  P Y A F+  FG     +     E    A+  F+E+        S++D +L+  
Sbjct: 137 EVLQSIPGYVAAFKQAFG-----NQKLGMEEVTQAIAAFEET---LVTPDSRFDKWLKGD 188

Query: 233 QTSLNAQELRGLELFNEPTKGNCASCHISEILPNGAFPQFTDYGLIAVGVPRNKRIPANK 292
           + +L  +E  G  LF E     C +CH    +   +F +    GL+A   P     PA  
Sbjct: 189 RRALTRKEQEGYRLFKE---SGCIACHNGPAVGGNSFQKM---GLVA---PYQTSNPAQG 239

Query: 293 DPRYHDFGLCGPERTDFQDNPEYCGLFKTPTLRNVALRGSFFHNGVFHTLQEVME 347
                   + G E   F         FK PTLRNV L   +FH+G   TL E ++
Sbjct: 240 RA-----DVTGKEADRFH--------FKVPTLRNVELTYPYFHDGGAATLAEAVD 281


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,259,882
Number of extensions: 53531
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 331
Effective length of database: 1,203,190
Effective search space: 398255890
Effective search space used: 398255890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)