BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0007.p
         (283 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312618|ref|YP_003776710.1| ABC transporter periplasmic pro...   290   9e-80

>gi|300312618|ref|YP_003776710.1| ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 263

 Score =  290 bits (742), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 160/271 (59%), Positives = 189/271 (69%), Gaps = 17/271 (6%)

Query: 13  LSAFVLAVSAFTGAQAGVLDDARTRGAVRIGQNYVPPAYTAGAKFRTPEGVDVILAEDIA 72
           L++  L V A   AQAGVLDDAR    +RIG ++VPP Y  G KFRTPE +  +LAED+A
Sbjct: 10  LTSVCLLVGA---AQAGVLDDARRSEQLRIGLDHVPPVYKGGMKFRTPENIATVLAEDLA 66

Query: 73  KRLNLRLDSVRNTNNAGTGDDGKAVQALKGARPDIALVTVEEGAARSGTAADGSVLIPTG 132
            +  L+ D   N  +           ALKG RPD+ L  V+   A   +AAD + LIPTG
Sbjct: 67  AQWKLKADLQPNVADRA---------ALKGVRPDVVLTRVDPAQA---SAADAT-LIPTG 113

Query: 133 YSAGAMAIMRTDTDIRKWEQLKGRTVCLSEGGSYVGQMTARYGAVEKVMRAPADSLLAVR 192
           YSAG MAIMR+DT IRKW+ LKGRTVC+S G  YVG ++ARYGA+EKVM APADSLLAVR
Sbjct: 114 YSAGGMAIMRSDTTIRKWDDLKGRTVCVSSGSPYVGTLSARYGAIEKVMPAPADSLLAVR 173

Query: 193 IGQCDAAVHDDTMLKELLKLPEWKKFSAQLPPQSRSMLMVKVPVADGAAIAYFRQTVAEW 252
           IGQCDAAVHDDT+LK LLKLPEWKKFSAQL P SR +L+++V   D A +A  RQ  A W
Sbjct: 174 IGQCDAAVHDDTLLKVLLKLPEWKKFSAQLAPVSRQVLVLQVRGNDPADLAAARQAAARW 233

Query: 253 SRGDFWTAQKKKWSNTVAFEVYLDQNVPDCH 283
           +   FW    +KW N VAFEVYLDQNVPDCH
Sbjct: 234 NDA-FWLNAIRKWVNNVAFEVYLDQNVPDCH 263


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 857,043
Number of extensions: 34110
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 199
Effective length of database: 1,222,130
Effective search space: 243203870
Effective search space used: 243203870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)