BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0005.p (336 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312620|ref|YP_003776712.1| ABC transporter periplasmic pro... 572 e-164 gi|300309715|ref|YP_003773807.1| nitrate/sulfonate/bicarbonate A... 64 2e-11 gi|300311646|ref|YP_003775738.1| taurine ABC transporter peripla... 57 2e-09 gi|300312970|ref|YP_003777062.1| nitrate/sulfonate/bicarbonate A... 56 3e-09 gi|300312687|ref|YP_003776779.1| nitrate/sulfonate/bicarbonate A... 56 3e-09 >gi|300312620|ref|YP_003776712.1| ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 333 Score = 572 bits (1474), Expect = e-164, Method: Compositional matrix adjust. Identities = 277/316 (87%), Positives = 300/316 (94%) Query: 21 FSTPAMALEKFKIGYLRVMDDAQAMAAYEAGLYKKYGLDVELIEFKSGTDLIKAIVGGQL 80 FS A ALEKFKIGYLRVMDDAQAMAAYEAGLYKKYGLDVELIEFKSGTDL+KAIVGGQL Sbjct: 18 FSGNAFALEKFKIGYLRVMDDAQAMAAYEAGLYKKYGLDVELIEFKSGTDLVKAIVGGQL 77 Query: 81 DSGVFGFTNAVAWASKGADLKVVSGAQLGYHAIVAREDAHINKVSDLKGKTLASQAEGST 140 DSGVFGF+NAVAWASKGADLKVV GAQLGYHA+VARED+ INKV+DLKGKTLASQAEGST Sbjct: 78 DSGVFGFSNAVAWASKGADLKVVGGAQLGYHALVAREDSGINKVADLKGKTLASQAEGST 137 Query: 141 ADVVLKGVVFRDAGLKADDVNVLGVSPQVAVQSLVGKRVDAAFLFEPQARIAQLIAPVRQ 200 AD VLKGVV RDAG+KADDVNV+GVSPQVAVQSLVGKRVDAAFLFEPQARIAQLIAPV+Q Sbjct: 138 ADTVLKGVVLRDAGIKADDVNVMGVSPQVAVQSLVGKRVDAAFLFEPQARIAQLIAPVKQ 197 Query: 201 IYEIGEVWPFPCMVVITSGDTLKNRRAAVWKSLDAQRDAIELLKKKPAEAAKLIAGYFIA 260 +YEIGEVWPFPCMVVITSG+TLK +R AVWKSLDAQRDAI LL+KKPAEA+KLIAGYFIA Sbjct: 198 VYEIGEVWPFPCMVVITSGETLKKKREAVWKSLDAQRDAITLLQKKPAEASKLIAGYFIA 257 Query: 261 EPTLKTLKHGEVLREDVIRDAIKSQTFNAKLNEKEQNRMQEIADILQAQGSLKTKDGKPF 320 EPTLKTLKHGE+LREDVIRDAIKSQTF K+++K+Q+RMQEIADILQ+QGSLKT+DGKPF Sbjct: 258 EPTLKTLKHGEMLREDVIRDAIKSQTFTPKISKKDQDRMQEIADILQSQGSLKTRDGKPF 317 Query: 321 EVRSIVDLAWQKDRKL 336 +V SI DL+WQ RKL Sbjct: 318 DVNSITDLSWQNARKL 333 >gi|300309715|ref|YP_003773807.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 99/205 (48%), Gaps = 11/205 (5%) Query: 55 KYGLDVELIEFKSGTDLIKAIVGGQLDSGVFGFTNAVAWASKGADLKVVSGAQLGYHAIV 114 K G+ V+ F G D+++ I+ G+LD G A++ + GA + VV+G G +V Sbjct: 49 KCGIKVDEKVFAKGPDVMQGILAGELDVGTTASEAAISGRANGAPIYVVAGFAKGGARLV 108 Query: 115 AREDAHINKVSDLKGKTLASQAEGSTADVVLKGVVFRDAGLKADDVNVLGVSPQVAVQSL 174 A +D+ I V DLKGK + G +V+L + ++ GL A DV ++ ++ Q+L Sbjct: 109 AGKDSGIKSVKDLKGKKVGV-TRGGIHEVLLDAELGQN-GLSAKDVTIVYLAFADLNQAL 166 Query: 175 VGKRVDAAFLFEPQARIA---QLIAPVRQIYE--IGEVWPFPCMVVITSGDTLKNRRAAV 229 +GK +DA EPQ+ A V + Y+ IGE P+ MV+ +R Sbjct: 167 LGKNIDAMMQSEPQSSQAINKGFGVEVMKPYDTPIGE--PYRTMVMTEK--FYNEKRPLA 222 Query: 230 WKSLDAQRDAIELLKKKPAEAAKLI 254 K + +A + KP A K + Sbjct: 223 EKFMRCFLEATKTFIDKPEVAEKYV 247 >gi|300311646|ref|YP_003775738.1| taurine ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/139 (33%), Positives = 68/139 (48%), Gaps = 10/139 (7%) Query: 54 KKYGLDVELIEFKSGTDLIKAIVGGQLDSGVFGFTNAVAWASKGADLKV-----VSGAQL 108 K G ++ +F SG D+I AI GG + G G + A AS+G D+K +SG Sbjct: 51 KATGKKIDFRKFNSGADVIAAIAGGDVQVGYVGSSPLAAAASRGLDVKAFYLASISGTD- 109 Query: 109 GYHAIVAREDAHINKVSDLKGKTLASQAEGSTADVVLKGVVFRDAGLKADDVNVLGVSPQ 168 A+V R A IN V+DLKGK LA+ A ST L ++ + G DV V + Sbjct: 110 --EALVVRNGAGINSVADLKGKKLAA-APVSTDHYQLLALI-KSQGWTEKDVKVFAIPQP 165 Query: 169 VAVQSLVGKRVDAAFLFEP 187 V + +D F+++P Sbjct: 166 DIVAAYNRGDIDGGFVWDP 184 >gi|300312970|ref|YP_003777062.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 345 Score = 56.2 bits (134), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 107/238 (44%), Gaps = 34/238 (14%) Query: 1 MKSTLKRLLLVASTALAALVF---STPAMALEKFKI----GYLRVMDDAQAMAAYEAGLY 53 MK + K+LL+ A LA S A ALEK K+ G + A + G + Sbjct: 1 MKLSWKQLLIAAGLFLAGYFSFNGSAGAQALEKPKVSIAVGGKNLFYYLPLTIAEQLGYF 60 Query: 54 KKYGLDVELIEFKSGTDLIKAIVGGQLD--SGVFGFT--------NAVAWASKGADLKVV 103 K GL VE+ +F G ++A+VGG D SG + T VA+ +G ++V Sbjct: 61 KDEGLQVEISDFAGGAKALQAMVGGSADVVSGAYEHTINMQAKNQPIVAFVLQGRAPQIV 120 Query: 104 SGAQLGYHAIVAREDAHINKVSDLKGKTLASQAEGSTADVVLKGVVFRDAGLKADDVNVL 163 A+ + + V+DLKGK + A GS+ V+ V AGLK DV+ + Sbjct: 121 -------LAVNNKTMPNYKTVADLKGKKIGVTAPGSSTS-VMASYVLAKAGLKPSDVSFI 172 Query: 164 GVSPQV-AVQSLVGKRVDAAFLFEP------QARIAQLIAPVRQIYEIGEVW--PFPC 212 GV A+ ++ ++DA +P Q++ + IA R + + +V+ P P Sbjct: 173 GVGAAAGAISAVRSGQIDAIANLDPVISMLEQSKEIKTIADTRTLKDTNDVFGGPMPA 230 >gi|300312687|ref|YP_003776779.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 353 Score = 56.2 bits (134), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 9/147 (6%) Query: 51 GLYKKYGLDVELIEFKSGTDLIKAIVGGQLDSGVFGFTNAVAWASKGADLKVVSGAQL-- 108 G +K+ GLDVEL +G D ++ G + + V + +++ SKG + V S AQL Sbjct: 70 GYFKEEGLDVELQSQPAGVDAENELLAGAVQAVVGYYDHSIDLQSKGKE--VTSIAQLLL 127 Query: 109 ---GYHAIVAREDAHINKVSDLKGKTLASQAEGSTADVVLKGVVFRDAGLKADDVNVLGV 165 G + A + ++DLKGKTL GS++ + + + R AGLKA D ++L V Sbjct: 128 VPGGMEMVRADLADSVRSMADLKGKTLGVTGLGSSSSFIAQYLANR-AGLKAGDYSILPV 186 Query: 166 -SPQVAVQSLVGKRVDAAFLFEPQARI 191 + + ++ KRVD A+ EP I Sbjct: 187 GAGNTLIAAMKQKRVDVAWTTEPTTSI 213 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 899,539 Number of extensions: 35226 Number of successful extensions: 166 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 164 Number of HSP's successfully gapped: 6 Length of query: 336 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 250 Effective length of database: 1,212,660 Effective search space: 303165000 Effective search space used: 303165000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)