BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0003.p (196 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 234 4e-63 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 124 4e-30 gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 118 3e-28 gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate A... 118 4e-28 gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate A... 115 3e-27 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 234 bits (597), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 109/139 (78%), Positives = 118/139 (84%) Query: 24 MKLSFKNIQKSFSGLHVIDDFSRDIEQGELVALVGPSGCGKSTLLHIAAGLETPSSGSIL 83 MKLSF N+ K F LHVI++F+R+I GELVALVGPSGCGKSTLLH+AAGLE PSSGS+ Sbjct: 1 MKLSFNNVAKHFGDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVA 60 Query: 84 ADGQPVTGPHPERTLMFQENALYPWLTLEQNVALALEFQKVDKKSAAAQARAWLAKVNLS 143 DGQ + GPHPERTLMFQENALYPWLTL+QNVALALEFQ VDKK AA QAR WL V L Sbjct: 61 GDGQTIRGPHPERTLMFQENALYPWLTLQQNVALALEFQSVDKKKAAEQARVWLENVKLK 120 Query: 144 GFEAYYPHQVSGGMRQRAA 162 GFE YYPHQVSGGMRQRAA Sbjct: 121 GFEHYYPHQVSGGMRQRAA 139 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 124 bits (312), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 59/120 (49%), Positives = 76/120 (63%) Query: 43 DFSRDIEQGELVALVGPSGCGKSTLLHIAAGLETPSSGSILADGQPVTGPHPERTLMFQE 102 D + DI G+ V L+GPSGCGKSTLL+ AG PSSG IL D + V+ P P+R ++FQE Sbjct: 31 DINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQILTDDKVVSEPGPDRGMVFQE 90 Query: 103 NALYPWLTLEQNVALALEFQKVDKKSAAAQARAWLAKVNLSGFEAYYPHQVSGGMRQRAA 162 AL+PW+T+EQNVA LE + K + L K+ L F +P +SGGMRQR A Sbjct: 91 YALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLDKLGLIDFRTRFPKDLSGGMRQRVA 150 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 118 bits (296), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 59/143 (41%), Positives = 82/143 (57%) Query: 20 GIEFMKLSFKNIQKSFSGLHVIDDFSRDIEQGELVALVGPSGCGKSTLLHIAAGLETPSS 79 IE +S + I + DFS + +GE VA+VGP+GCGKST L + GL P+ Sbjct: 21 AIELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKPTL 80 Query: 80 GSILADGQPVTGPHPERTLMFQENALYPWLTLEQNVALALEFQKVDKKSAAAQARAWLAK 139 G + GQPV G P +FQ +A++PW ++ +NVA F+ K A A A W+ + Sbjct: 81 GEVRVMGQPVNGIDPRIGFVFQNDAVFPWRSVRENVAAGPLFRGQPKAQAHALADEWIRR 140 Query: 140 VNLSGFEAYYPHQVSGGMRQRAA 162 V L F +YPHQ+SGGMR+R A Sbjct: 141 VGLDKFGDHYPHQLSGGMRKRVA 163 >gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 278 Score = 118 bits (295), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 67/141 (47%), Positives = 90/141 (63%), Gaps = 4/141 (2%) Query: 26 LSFKNIQKSF-SGLHVIDDFSRDIEQGELVALVGPSGCGKSTLLHIAAGLETPSSGSI-L 83 LS + ++K++ +G H +D+ DI +GE V+L+GPSGCGKSTLL + AGLE PS G I Sbjct: 20 LSAQRVEKTYRNGTHALDEVRLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIRW 79 Query: 84 ADGQPVTGPHPERTL--MFQENALYPWLTLEQNVALALEFQKVDKKSAAAQARAWLAKVN 141 G T PERTL +FQE L PW T+EQNV L L+ + V + A A+ A L +V Sbjct: 80 WGGNLATVGTPERTLAMVFQEATLMPWATVEQNVRLPLDLRHVPRAQADARVAASLKRVG 139 Query: 142 LSGFEAYYPHQVSGGMRQRAA 162 L F A P ++SGGM+ RA+ Sbjct: 140 LESFHAVLPRELSGGMQMRAS 160 >gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 115 bits (288), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 57/115 (49%), Positives = 76/115 (66%) Query: 48 IEQGELVALVGPSGCGKSTLLHIAAGLETPSSGSILADGQPVTGPHPERTLMFQENALYP 107 I GE V++VGP+GCGKSTLL++ AGL PSSGS+ G+ + G + MFQ AL P Sbjct: 34 IAPGEFVSVVGPTGCGKSTLLNVGAGLLQPSSGSVKVFGEELKGINRRAGYMFQAEALMP 93 Query: 108 WLTLEQNVALALEFQKVDKKSAAAQARAWLAKVNLSGFEAYYPHQVSGGMRQRAA 162 W + QNV L+++ ++K+AA WLA+V L GF YPHQ+SGGMR+R A Sbjct: 94 WRSALQNVIAGLQYRGHEEKAAAELGEQWLARVGLQGFGDRYPHQLSGGMRKRVA 148 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.131 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 607,781 Number of extensions: 23931 Number of successful extensions: 342 Number of sequences better than 1.0e-08: 86 Number of HSP's gapped: 274 Number of HSP's successfully gapped: 87 Length of query: 196 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 116 Effective length of database: 1,241,070 Effective search space: 143964120 Effective search space used: 143964120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)