BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0002.p (235 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 197 9e-52 gi|300312622|ref|YP_003776714.1| nucleoside-diphosphate-sugar ep... 159 2e-40 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 103 1e-23 gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate A... 101 6e-23 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 97 1e-21 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 197 bits (500), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 91/119 (76%), Positives = 100/119 (84%) Query: 1 MKLSFKNIQKSFSGLHVIDDFSRDIEQGELVALVGPSGCGKSTLLHIAAGLETPSSGSIL 60 MKLSF N+ K F LHVI++F+R+I GELVALVGPSGCGKSTLLH+AAGLE PSSGS+ Sbjct: 1 MKLSFNNVAKHFGDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVA 60 Query: 61 ADGQPVTGPHPERTLMFQENALYPWLTLEQNVALALEFQKVDKKSAAAQARAWLAKVNL 119 DGQ + GPHPERTLMFQENALYPWLTL+QNVALALEFQ VDKK AA QAR WL V L Sbjct: 61 GDGQTIRGPHPERTLMFQENALYPWLTLQQNVALALEFQSVDKKKAAEQARVWLENVKL 119 >gi|300312622|ref|YP_003776714.1| nucleoside-diphosphate-sugar epimerase [Herbaspirillum seropedicae SmR1] Length = 293 Score = 159 bits (402), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 76/118 (64%), Positives = 97/118 (82%) Query: 114 LAKVNLGTPALSAEDDVYTNHIHADDLAAIAVRAIDQARPLRVYHAVDDSDMKMGDYFDA 173 L +++ G PAL A++DV+TNHIHADDLA +++ A+ P R+YHAVDD+++KMGDYFDA Sbjct: 168 LERLHKGLPALLAQEDVHTNHIHADDLARVSLAALRLGAPNRLYHAVDDTELKMGDYFDA 227 Query: 174 VARTFNLPAPPRLPRAELQQQVTPMMLSFMSESRRLRNDRLRNELGVRLRYPDVATLL 231 VA L PPRLPRAEL++ V+PMMLSFMSESRRL+N R++ ELGVRLRYPDV +LL Sbjct: 228 VADAAGLARPPRLPRAELERSVSPMMLSFMSESRRLQNRRIKEELGVRLRYPDVQSLL 285 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 103 bits (257), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 49/102 (48%), Positives = 65/102 (63%) Query: 18 IDDFSRDIEQGELVALVGPSGCGKSTLLHIAAGLETPSSGSILADGQPVTGPHPERTLMF 77 + D + DI G+ V L+GPSGCGKSTLL+ AG PSSG IL D + V+ P P+R ++F Sbjct: 29 LKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQILTDDKVVSEPGPDRGMVF 88 Query: 78 QENALYPWLTLEQNVALALEFQKVDKKSAAAQARAWLAKVNL 119 QE AL+PW+T+EQNVA LE + K + L K+ L Sbjct: 89 QEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLDKLGL 130 >gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 278 Score = 101 bits (251), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 58/121 (47%), Positives = 77/121 (63%), Gaps = 4/121 (3%) Query: 3 LSFKNIQKSF-SGLHVIDDFSRDIEQGELVALVGPSGCGKSTLLHIAAGLETPSSGSI-L 60 LS + ++K++ +G H +D+ DI +GE V+L+GPSGCGKSTLL + AGLE PS G I Sbjct: 20 LSAQRVEKTYRNGTHALDEVRLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIRW 79 Query: 61 ADGQPVTGPHPERTL--MFQENALYPWLTLEQNVALALEFQKVDKKSAAAQARAWLAKVN 118 G T PERTL +FQE L PW T+EQNV L L+ + V + A A+ A L +V Sbjct: 80 WGGNLATVGTPERTLAMVFQEATLMPWATVEQNVRLPLDLRHVPRAQADARVAASLKRVG 139 Query: 119 L 119 L Sbjct: 140 L 140 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 96.7 bits (239), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 53/122 (43%), Positives = 71/122 (58%), Gaps = 5/122 (4%) Query: 3 LSFKNIQKSFSG-----LHVIDDFSRDIEQGELVALVGPSGCGKSTLLHIAAGLETPSSG 57 L +N FSG +H +D S DI G V +G SGCGKSTLL+ AG S G Sbjct: 2 LKVENASVYFSGRDKQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEG 61 Query: 58 SILADGQPVTGPHPERTLMFQENALYPWLTLEQNVALALEFQKVDKKSAAAQARAWLAKV 117 I DGQPV+GP ER ++FQ+++L PW +++ NVAL L+F V K + +A+ L V Sbjct: 62 RISLDGQPVSGPGAERGVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLV 121 Query: 118 NL 119 L Sbjct: 122 GL 123 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 650,179 Number of extensions: 24843 Number of successful extensions: 324 Number of sequences better than 1.0e-08: 73 Number of HSP's gapped: 295 Number of HSP's successfully gapped: 73 Length of query: 235 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 153 Effective length of database: 1,231,600 Effective search space: 188434800 Effective search space used: 188434800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)