BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0067.p
         (410 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314028|ref|YP_003778120.1| hypothetical protein Hsero_4751...   317   1e-87

>gi|300314028|ref|YP_003778120.1| hypothetical protein Hsero_4751
           [Herbaspirillum seropedicae SmR1]
          Length = 448

 Score =  317 bits (812), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 168/345 (48%), Positives = 227/345 (65%), Gaps = 5/345 (1%)

Query: 58  QRDLHRIITKSLRQQQDDVLYEALERARDQEAEAYPYLREKIEEAAETVFFTRNERSYEV 117
           Q +L R++  +LRQ+ DD LYEALE+ R  +   + +LRE +EE+A+ V   R E+  E+
Sbjct: 98  QDELERMVRHALRQRDDDTLYEALEQLRYDDVRGHGFLREVVEESADIVVLRRGEKEMEI 157

Query: 118 NAFVIPMFVRTIGGLDAEQNFRDADAFTELTASLKEAQLESADAKVVLVSYAYHLDEIDA 177
           NAF+IPM VRT GGL  EQ   D +AF  L  SL++A LES  A+VVLV + YH +EI+A
Sbjct: 158 NAFLIPMLVRTRGGLREEQALADGEAFDALRESLQQAGLESPKARVVLVHHLYHPEEINA 217

Query: 178 ITYSHLEAMVRDAYAAMTDKKISETPAINRSMSSWPANRFGADDTAVELRFLLGFALKTA 237
           +++  +EAM RDA+A++TDKK+   PAI RSM  WPA  F ADD A+ELRFLLGFALK  
Sbjct: 218 LSFGEVEAMNRDAFASLTDKKVMSVPAIERSMRGWPATTFSADDEALELRFLLGFALKDL 277

Query: 238 DDPFYTIPKDEAAMDAYFAVRAQRFQAWSEKVVPLVQRCLVADGR---QFDVHFLYQDLF 294
           DDPFY +P DEAA DAYF  RA+RF+ WS+++ PL+Q+CL        Q  +HFLYQDL 
Sbjct: 278 DDPFYAVPADEAAADAYFEQRAERFRQWSQQITPLMQQCLTGKTGAQAQCQLHFLYQDLL 337

Query: 295 HGGKERGIAEYFMLQMMSELDHGLQESGVDAQQTHAVMGPVDMEGEVLLRVNIYNGETVV 354
           HG K  G AEY  LQM+SEL+ GL  +G +  Q  AV+   +   E+ L V +     ++
Sbjct: 338 HGAKRTGNAEYRTLQMLSELEQGLAAAGAEPAQATAVVALEEEGDEMRLLVVLRGTAGML 397

Query: 355 ATAEKPLNGAGDLQIELDDTCDALLTMGLKSVALAEAFDAAGKAV 399
           A +E  L   G  Q  L +  DAL ++G+  V LA+ FDA+G+A+
Sbjct: 398 ARSELRLEDDG--QDALWEAADALASLGVAGVRLADGFDASGQAL 440


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,225,007
Number of extensions: 50339
Number of successful extensions: 169
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 323
Effective length of database: 1,207,925
Effective search space: 390159775
Effective search space used: 390159775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)