BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0065.p
         (112 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310476|ref|YP_003774568.1| major facilitator superfamily t...   123   3e-30
gi|300310490|ref|YP_003774582.1| major facilitator superfamily p...   103   2e-24
gi|300313516|ref|YP_003777608.1| major facilitator superfamily p...    84   2e-18
gi|300311164|ref|YP_003775256.1| major facilitator superfamily p...    84   2e-18
gi|300311567|ref|YP_003775659.1| major facilitator superfamily p...    84   2e-18

>gi|300310476|ref|YP_003774568.1| major facilitator superfamily
          transporter protein [Herbaspirillum seropedicae SmR1]
          Length = 449

 Score =  123 bits (309), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 57/72 (79%), Positives = 66/72 (91%)

Query: 21 LASAIDKVKWRILPLFVIMFIANYIDRVNIGFVRSHLATDLGIGTAAFGFGAGLFFIGYA 80
          L  A+ K+K R+LPLFVIMFI NYIDRVNIGFVRSHLATD+GIGTAA+G GAGLFF+GYA
Sbjct: 26 LQQAVAKIKQRVLPLFVIMFIVNYIDRVNIGFVRSHLATDVGIGTAAYGLGAGLFFVGYA 85

Query: 81 IFEVPSNMLLQK 92
          +FEVPSN+LLQ+
Sbjct: 86 LFEVPSNLLLQR 97


>gi|300310490|ref|YP_003774582.1| major facilitator superfamily
          permease [Herbaspirillum seropedicae SmR1]
          Length = 447

 Score =  103 bits (258), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/83 (75%), Positives = 71/83 (85%), Gaps = 3/83 (3%)

Query: 10 AAHPDGKASGPLASAIDKVKWRILPLFVIMFIANYIDRVNIGFVRSHLATDLGIGTAAFG 69
          ++ P G A   L SA+ K+KWRILPLFV MFI NYIDRVNIGFVRSHL+TDLGIG AAFG
Sbjct: 6  SSTPAGLA---LTSAVSKIKWRILPLFVAMFIINYIDRVNIGFVRSHLSTDLGIGAAAFG 62

Query: 70 FGAGLFFIGYAIFEVPSNMLLQK 92
           GAGLFF+GYA+FEVPSNMLLQ+
Sbjct: 63 LGAGLFFVGYALFEVPSNMLLQR 85


>gi|300313516|ref|YP_003777608.1| major facilitator superfamily
          permease [Herbaspirillum seropedicae SmR1]
          Length = 437

 Score = 84.3 bits (207), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 48/67 (71%)

Query: 26 DKVKWRILPLFVIMFIANYIDRVNIGFVRSHLATDLGIGTAAFGFGAGLFFIGYAIFEVP 85
           KV WRI+P  ++ ++  Y+DRVN+GF +  ++ DLG     FG GAGLFFIGY +FEVP
Sbjct: 23 KKVFWRIMPFLMLCYVIAYLDRVNVGFAKLQMSQDLGFSETVFGLGAGLFFIGYFLFEVP 82

Query: 86 SNMLLQK 92
          SN+L+ K
Sbjct: 83 SNILMHK 89


>gi|300311164|ref|YP_003775256.1| major facilitator superfamily
          permease [Herbaspirillum seropedicae SmR1]
          Length = 437

 Score = 84.3 bits (207), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 48/66 (72%)

Query: 27 KVKWRILPLFVIMFIANYIDRVNIGFVRSHLATDLGIGTAAFGFGAGLFFIGYAIFEVPS 86
          K+ WR++P  V +F+  +IDRVN+GF +  +  DL    A +G GAG+FFIGY IFEVPS
Sbjct: 27 KIAWRLIPFLVFLFVLAWIDRVNVGFAKLQMLQDLQFSEAVYGLGAGIFFIGYFIFEVPS 86

Query: 87 NMLLQK 92
          N+LL+K
Sbjct: 87 NLLLEK 92


>gi|300311567|ref|YP_003775659.1| major facilitator superfamily
          permease [Herbaspirillum seropedicae SmR1]
          Length = 435

 Score = 84.3 bits (207), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 48/67 (71%)

Query: 26 DKVKWRILPLFVIMFIANYIDRVNIGFVRSHLATDLGIGTAAFGFGAGLFFIGYAIFEVP 85
           KV WR+LPL  + ++A+Y+DRVN+GF +  +  DL      +G GAG+FF+GY +FEVP
Sbjct: 22 SKVTWRLLPLLFLCYVASYLDRVNVGFAKLQMLQDLKFSDTVYGLGAGIFFLGYFVFEVP 81

Query: 86 SNMLLQK 92
          SNM+L K
Sbjct: 82 SNMILHK 88


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.144    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 245,556
Number of extensions: 6477
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 9
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 9
Length of query: 112
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 39
Effective length of database: 1,274,215
Effective search space: 49694385
Effective search space used: 49694385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 124 (52.4 bits)