BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0064.p
         (497 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310489|ref|YP_003774581.1| glucarate dehydratase [Herbaspi...   721   0.0  
gi|300310475|ref|YP_003774567.1| mandelate racemase/muconate lac...   229   3e-61

>gi|300310489|ref|YP_003774581.1| glucarate dehydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 455

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/442 (83%), Positives = 392/442 (88%), Gaps = 3/442 (0%)

Query: 56  APVVTAMQVIPVAGRDGMLLNLSGAHGPYFTRNIVILTDSAGNTGVGEVPGGERIRQTLE 115
           AP VT M+VIPVAG D MLLNLSGAHGPYFTRN+VILTDSAGNTGVGEVPGGE IRQTLE
Sbjct: 17  APRVTEMRVIPVAGHDSMLLNLSGAHGPYFTRNLVILTDSAGNTGVGEVPGGEGIRQTLE 76

Query: 116 DARELVVGQSIANYNAVLNRMRRTFSDRDAGGRXGRGLQTFDLRITIHAVTAVEAALLDL 175
           DAR LVVGQSI N   +LNR R  F+DRD GGR   GLQTFDLRI IHAVTA+EAALLDL
Sbjct: 77  DARTLVVGQSIGNVQGILNRARTAFADRDTGGR---GLQTFDLRIAIHAVTALEAALLDL 133

Query: 176 LGKFLGVPVAALLGEGQQRDKVEMLGYLFYVGDRNATDLDYHSEPDNADDWQRLRHEKAM 235
           LGKFL VPVAALLGEGQQRD+VEMLGYLFYV DRN TDL Y + PD  DDW RLRHE A+
Sbjct: 134 LGKFLDVPVAALLGEGQQRDEVEMLGYLFYVADRNKTDLPYLAAPDAQDDWTRLRHEAAL 193

Query: 236 DAEAIVRLAEAAYRRYGFNDFKLKGGVLRGEDEIEAIAALHERFPQARITLDPNGGWLLK 295
             EA+VRLAEAAY RYGFNDFKLKGGV+RGE+EI A+ AL ERFP+ARITLDPNGGWLLK
Sbjct: 194 TPEAVVRLAEAAYARYGFNDFKLKGGVMRGEEEIAAVTALAERFPKARITLDPNGGWLLK 253

Query: 296 DAIRLCRDQHGVLAYAEDPCGAENGYSGREVMAEFRRATGLQTATNMIATDWREMGHTIR 355
           DAIRLCRDQH VLAYAEDPCGAE+GYSGREVMAEFRRATGLQTATNM+ATDWR+MGH I 
Sbjct: 254 DAIRLCRDQHDVLAYAEDPCGAEDGYSGREVMAEFRRATGLQTATNMVATDWRQMGHAIS 313

Query: 356 LQSVDIPLADPHFWTMQGSIRVAQLCNEWGLTWGSHSNNHFDISLAMFTQVAAAAPGKIT 415
           LQSVDIPLADPHFWTMQGS+RVAQ+C+EWGLTWGSHSNNHFD+SLAMFT VAAAAPGKIT
Sbjct: 314 LQSVDIPLADPHFWTMQGSVRVAQMCHEWGLTWGSHSNNHFDVSLAMFTHVAAAAPGKIT 373

Query: 416 AIDTHWIWQDGQRLTREPFRIVGGMVDVPAAPGLGVEIDMEQVLAANALYKAKGLGARDD 475
           AIDTHWIWQDGQRLTREP +IVGG V VP  PGLGVE+DM QV AA+  Y+  GLGARDD
Sbjct: 374 AIDTHWIWQDGQRLTREPLQIVGGKVQVPTKPGLGVELDMAQVEAAHQTYRNMGLGARDD 433

Query: 476 AIAMQYLIPGWKFDNKKPCLVR 497
           A+AMQYLIPGWKFD KKPCLVR
Sbjct: 434 AVAMQYLIPGWKFDPKKPCLVR 455


>gi|300310475|ref|YP_003774567.1| mandelate racemase/muconate
           lactonizing [Herbaspirillum seropedicae SmR1]
          Length = 424

 Score =  229 bits (585), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 155/434 (35%), Positives = 217/434 (50%), Gaps = 23/434 (5%)

Query: 59  VTAMQVIPVAGRDGMLLNLSGAHGPYFTRNIVILTDSAGNTGVGEVPGGERIRQTLEDAR 118
           +T + V P+A +DG LLN SG H PY  R+I+ +    G  G+GE  G     + L+  +
Sbjct: 3   ITRVTVTPIAFKDGPLLNASGIHEPYALRSIIEIETDNGYIGLGESYGDAPALKILDLVK 62

Query: 119 ELVVGQSIANYNAVLNRMRRTFSDRDAGGRXGRGLQ--TFDLRITIHAVTAVEAALLDLL 176
           E +VG    N N +   +R   +        G  L   +   +   +A +A E A LD  
Sbjct: 63  ERLVGLDPFNLNGLRAIVRGVVAAMAPASNAGAELAPGSHASKAVSNAYSAFEVACLDAQ 122

Query: 177 GKFLGVPVAALLGEGQQRDKVEMLGYLFYVGDRNATDLDYHSEPDNADDWQRLRHEKAMD 236
            ++L VP+  LLG G  R ++    YLF+   + A  +D    P   D W      +A+ 
Sbjct: 123 ARYLNVPLVDLLG-GAVRKEIPFSAYLFF---KYAQHID---SPYAPDAWG-----EALS 170

Query: 237 AEAIVRLAEAAYRRYGFNDFKLKGGVLRGEDEIEAIAALHERFPQARITLDPNGGWLLKD 296
            E IV  A       GF   KLK G L  E E+  I AL + FP A + +DPNG W L+ 
Sbjct: 171 EEQIVAQARKMIEENGFQSIKLKAGALAPEHEVACIKALRKAFPDAPLRIDPNGNWSLQT 230

Query: 297 AIRLCRDQHGVLAYAEDPCGAENGYSGREVMAEFRRATGLQTATNMIATDWREMGHTIRL 356
           AIR+       L Y EDP        G E MAE  R TGL  ATNM+ TD+ E+  ++ L
Sbjct: 231 AIRMAELLGDDLQYYEDPT------PGLEGMAELHRRTGLPLATNMVVTDFDELRRSVAL 284

Query: 357 QSVDIPLADPHFW-TMQGSIRVAQLCNEWGLTWGSHSNNHFDISLAMFTQVAAAAPGKIT 415
            SV I LAD H+W  ++ + ++A++C+ +GL    HSN+H  ISL   + VAAA      
Sbjct: 285 DSVQIVLADHHYWGGLRDTQQLAKMCDVFGLGVSMHSNSHLGISLMAMSHVAAAVENLSY 344

Query: 416 AIDTHWIWQ--DGQRLTREPFRIVGGMVDVPAAPGLGVEIDMEQVLAANALYKAKGLGAR 473
           A DTH+ WQ  D + +      I  G V +  APGLGVE+D +Q+   + LY   G+  R
Sbjct: 345 ACDTHYPWQEPDEEVIQGGKLPIRNGCVQITDAPGLGVEVDQDQLRKLHQLYLECGIRQR 404

Query: 474 DDAIAMQYLIPGWK 487
           DD   M+   P WK
Sbjct: 405 DDVGQMRKYQPDWK 418


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,573,945
Number of extensions: 67863
Number of successful extensions: 210
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 2
Length of query: 497
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 408
Effective length of database: 1,198,455
Effective search space: 488969640
Effective search space used: 488969640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)