BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0058.p (244 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312813|ref|YP_003776905.1| glutamate/aspartate ABC transpo... 369 e-103 gi|300313150|ref|YP_003777242.1| glutamate/aspartate ABC transpo... 240 7e-65 gi|300313611|ref|YP_003777703.1| amino acid ABC transporter perm... 107 9e-25 gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm... 106 1e-24 gi|300313149|ref|YP_003777241.1| glutamate/aspartate ABC transpo... 102 4e-23 >gi|300312813|ref|YP_003776905.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 241 Score = 369 bits (948), Expect = e-103, Method: Compositional matrix adjust. Identities = 186/242 (76%), Positives = 204/242 (84%), Gaps = 2/242 (0%) Query: 1 MDYRWNWSVFLHQAADNQTYADWLLSGLSVTLALGLSAWCLALALGTVLGIMRTLPNRWL 60 M Y+W WSVFL + QTY DWLLSGL VT+ALGLSAW LAL LGT LGI+RTLPNR L Sbjct: 1 MAYQWQWSVFLQAPSTGQTYLDWLLSGLGVTVALGLSAWILALVLGTFLGILRTLPNRAL 60 Query: 61 RGAAATYVELFRNVPLLVQVFIWYFAMPEVLPFGIGDDIKSMSPLAQQFVTAMLCLGFFT 120 G AA YVELFRNVPLLVQ+FIWYFAMPE+LP+G D +K++ P+ QQFV AMLCLG FT Sbjct: 61 SGFAACYVELFRNVPLLVQIFIWYFAMPELLPWG--DAVKALPPMTQQFVMAMLCLGMFT 118 Query: 121 AARVCEQVRSGIGALPPGQKNAGLAIGFTLAQTYRHVLLPMSFRIILPPLTSEFLNIFKN 180 AARVCEQVRSGI +LP GQK AGLA+G TL QTY VLLPM+ RI+LPPLTSEFLNIFKN Sbjct: 119 AARVCEQVRSGIESLPRGQKGAGLALGLTLGQTYLFVLLPMAMRIVLPPLTSEFLNIFKN 178 Query: 181 SAVASTIGLLELAAQGRQLVDYTAQPYEAFIAVTLTYMLINITVMALMRRLEGRLALPGF 240 SAVASTIGLLELAAQGRQLVDYTAQPYEAFIAVTL YMLINI VM+LMR LE + +LPG Sbjct: 179 SAVASTIGLLELAAQGRQLVDYTAQPYEAFIAVTLAYMLINICVMSLMRILERKTSLPGM 238 Query: 241 GG 242 G Sbjct: 239 AG 240 >gi|300313150|ref|YP_003777242.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 249 Score = 240 bits (613), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 126/243 (51%), Positives = 162/243 (66%), Gaps = 2/243 (0%) Query: 1 MDYRWNWSVFLHQAADNQTYADWLLSGLSVTLALGLSAWCLALALGTVLGIMRTLPNRWL 60 M Y WNW +F + D Y D LL+GL TLA AW +AL LGT+ G +RT W+ Sbjct: 1 MHYNWNWGIFWEMSPDGIPYIDTLLAGLKWTLATAACAWIMALILGTIFGTLRTTTKPWV 60 Query: 61 RGAAATYVELFRNVPLLVQVFIWYFAMPEVLPFGIGDDIKSMSPLAQQFVTAMLCLGFFT 120 A YVELFRN+PLLVQ+F+WYF MPE+LP IGD IKS+ FVTA L LGFFT Sbjct: 61 VRIANGYVELFRNIPLLVQMFLWYFVMPELLPAFIGDWIKSLPD--ASFVTATLALGFFT 118 Query: 121 AARVCEQVRSGIGALPPGQKNAGLAIGFTLAQTYRHVLLPMSFRIILPPLTSEFLNIFKN 180 ++RV QV +GI ALP GQ+ AG A+G T QTYR+VLLPM+FRII+P LT+EF I KN Sbjct: 119 SSRVAVQVTTGIQALPRGQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKN 178 Query: 181 SAVASTIGLLELAAQGRQLVDYTAQPYEAFIAVTLTYMLINITVMALMRRLEGRLALPGF 240 S+VA TIGL+EL A + ++T Q +EA T+ Y++I++ + + R LE A+PG+ Sbjct: 179 SSVALTIGLVELTAATYSMREFTFQTFEALTGATIIYVIISVIALFMARLLEKVTAVPGY 238 Query: 241 GGG 243 G Sbjct: 239 ITG 241 >gi|300313611|ref|YP_003777703.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 247 Score = 107 bits (267), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 74/253 (29%), Positives = 129/253 (50%), Gaps = 24/253 (9%) Query: 1 MDYRWNWSVFLHQAADNQTYADWLLSGLSVTLALGLSAWCLALALGTVLGIMRTL----- 55 MD+RW+ Q YA G+ +TL + L + + +G ++G++R Sbjct: 1 MDFRWS---------IIQGYAPLFAKGVLMTLQVSLISILIGTVIGLLVGMLRLAEVQHG 51 Query: 56 PNRW----LRGAAATYVELFRNVPLLVQVFIWYFAMPEVL---PFGI---GDDIKSMSPL 105 P +W +R A YV FR PL VQ+ + +FA+ VL G+ G+ +++ Sbjct: 52 PWKWPLKSMRWLAGFYVAFFRGTPLFVQIMLIHFAVMPVLVQQEHGLLITGELARTIKQD 111 Query: 106 AQQFVTAMLCLGFFTAARVCEQVRSGIGALPPGQKNAGLAIGFTLAQTYRHVLLPMSFRI 165 F++ + L A + E R+GI ++ GQ A ++G T R+V+LP +FR Sbjct: 112 YGAFLSGTVALSLNAGAYISEIFRAGIQSIERGQSYAAASLGMNYGLTMRYVVLPQAFRR 171 Query: 166 ILPPLTSEFLNIFKNSAVASTIGLLELAAQGRQLVDYTAQPYEAFIAVTLTYMLINITVM 225 +LPPL +E + + K+S++ S IGL ELA R + A+ +E +I +++ Y + I + Sbjct: 172 MLPPLGNEAITLLKDSSLVSAIGLAELAYAARTVAGTYARYWEPYITISVLYFSMTICLA 231 Query: 226 ALMRRLEGRLALP 238 ++ RLE + + P Sbjct: 232 LVVARLESKYSAP 244 >gi|300311471|ref|YP_003775563.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 106 bits (265), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 116/218 (53%), Gaps = 12/218 (5%) Query: 18 QTYADWLLSGLSVTLALGLSAWCLALALGTVLGIMRTLPNRWLRGAAATYVELFRNVPLL 77 Q A L G+ TL L++ L LG VL + R +P R + AA YV + R PLL Sbjct: 10 QQAAPTLAKGVGYTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSMMRGTPLL 69 Query: 78 VQVFIWYFAMPEVLPFGIGDDIKSMSPLAQQFVTAMLCLGFFTAARVCEQVRSGIGALPP 137 VQ+F+ Y+ +P G+G + SPL +L L +A + E +R I + Sbjct: 70 VQIFVVYYGLP-----GMGIE---FSPLT----AGVLTLSLNASAYLSESLRGAILGVTR 117 Query: 138 GQKNAGLAIGFTLAQTYRHVLLPMSFRIILPPLTSEFLNIFKNSAVASTIGLLELAAQGR 197 GQ NA ++G T QT R++++P + RI +P +++ +++ K++++ S I + EL + Sbjct: 118 GQWNAAFSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATK 177 Query: 198 QLVDYTAQPYEAFIAVTLTYMLINITVMALMRRLEGRL 235 +++ T +P ++A Y ++++ AL RLE +L Sbjct: 178 EVIAVTFRPLPLYVAAAAIYWMLSLCFEALQHRLEKKL 215 >gi|300313149|ref|YP_003777241.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 231 Score = 102 bits (253), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 117/214 (54%), Gaps = 6/214 (2%) Query: 26 SGLSVTLALGLSAWCLALALGTVLGIMRTLPNRWLRGAAATYVELFRNVPLLVQVFIWYF 85 +GL TL L SA + LGT+L +MR N+ L A TYV L R++PL++ +F +YF Sbjct: 20 TGLKFTLILTFSAMAGGIILGTLLAMMRLSSNKPLSFIATTYVNLIRSIPLVLVIFWFYF 79 Query: 86 AMPEVLPFGIGDDIKSMSPL-AQQFVTAMLCLGFFTAARVCEQVRSGIGALPPGQKNAGL 144 +P + + IG P+ F +A++ F AA CE +RSGI ++P GQ AG Sbjct: 80 LVPFIGAWMIGAS----EPIQVGAFQSALITFILFEAAYYCEIMRSGIQSIPRGQVFAGY 135 Query: 145 AIGFTLAQTYRHVLLPMSFRIILPPLTSEFLNIFKNSAVASTIGLL-ELAAQGRQLVDYT 203 AIG Q +V+LP +FR + P L ++ + +F++ ++ +G + + ++ Sbjct: 136 AIGMNYWQMMGNVVLPQAFRNMTPILLTQTIVLFQDVSLVYVLGSVPDFVTSASKIAQRD 195 Query: 204 AQPYEAFIAVTLTYMLINITVMALMRRLEGRLAL 237 + E ++ V + Y +++ + L++R + ++A+ Sbjct: 196 GRLVEMYLFVAVVYFVLSFGLSTLVKRFQKKIAI 229 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.140 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 793,841 Number of extensions: 31917 Number of successful extensions: 181 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 165 Number of HSP's successfully gapped: 19 Length of query: 244 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 161 Effective length of database: 1,226,865 Effective search space: 197525265 Effective search space used: 197525265 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)