BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0057.p
         (189 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312814|ref|YP_003776906.1| 4-carboxymuconolactone decarbox...   265   2e-72
gi|300311636|ref|YP_003775728.1| hypothetical protein Hsero_2321...   142   1e-35

>gi|300312814|ref|YP_003776906.1| 4-carboxymuconolactone
           decarboxylase domain-containing protein [Herbaspirillum
           seropedicae SmR1]
          Length = 191

 Score =  265 bits (676), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 129/186 (69%), Positives = 152/186 (81%), Gaps = 2/186 (1%)

Query: 2   SQSRLPVFDAAHATPDQKALLDDILSGPRGNLNGPFVSWIHSPEFGQLAQKLGAYCRYET 61
             +RLP       T +Q A+LD IL+GPR NLNGPFV+WIHSP  G+LAQ+LGA+CRYET
Sbjct: 3   KSNRLPAIVREQMTSEQTAMLDAILAGPRKNLNGPFVAWIHSPALGELAQRLGAFCRYET 62

Query: 62  GLPLRLSELAILATAQQWQSQAEWYIHLPIAIDAGLSAEVAEQIRRGETPMFALEDERVI 121
           GLPLRLSELAILATA  WQSQAEW+IHLPIA++AG+  +VAEQIR+G TP F LEDERVI
Sbjct: 63  GLPLRLSELAILATAAAWQSQAEWHIHLPIAVEAGILPDVAEQIRQGATPDFPLEDERVI 122

Query: 122 WSFASELGQRKRVTDATYARALELFGIKVVVNLIGLLGYYALVAMTLNVFGMRAEGQ--A 179
           W+FA+EL + KRV++ TYA A+ +FG+ VVVNL+GLLGYYALVAMTLN FGMRAEGQ   
Sbjct: 123 WNFANELYRDKRVSERTYAAAVAMFGLPVVVNLVGLLGYYALVAMTLNAFGMRAEGQGEG 182

Query: 180 SLPFPE 185
            LPF E
Sbjct: 183 DLPFAE 188


>gi|300311636|ref|YP_003775728.1| hypothetical protein Hsero_2321
           [Herbaspirillum seropedicae SmR1]
          Length = 206

 Score =  142 bits (359), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/184 (41%), Positives = 107/184 (58%), Gaps = 2/184 (1%)

Query: 4   SRLPVFDAAHATPDQKALLDDILSGPRGNLNGPFVSWIHSPEFGQLAQKLGAYCRYETGL 63
            RLPV      TP+QK   D+ L+  +  + GPF   +HSP+    A+ +G Y RY + +
Sbjct: 23  DRLPVIPPEQYTPEQKQAADEFLAARKVPVFGPFEPLMHSPQVMTQARAMGDYLRYHSAI 82

Query: 64  PLRLSELAILATAQQWQSQAEWYIHLPIAIDAGLSAEVAEQIRRGETPMFALEDERVIWS 123
              LSEL IL TA++W    EWY+H PIAI AG+  E+A  I  G  P    E+E +++ 
Sbjct: 83  GNTLSELVILITAREWTQDYEWYVHYPIAIKAGIKPEIAAAIADGRRPEGMSEEETIVYD 142

Query: 124 FASELGQRKRVTDATYARALELFGIKVVVNLIGLLGYYALVAMTLNVFGMRAEGQAS--L 181
           F+ EL + KRV+D T+ARA + FG K VV+L G+  YY L+AM +N    +A   A   +
Sbjct: 143 FSIELHRNKRVSDQTFARAEKRFGKKGVVDLTGVNSYYTLLAMQMNAAQYQAPKDAKRLV 202

Query: 182 PFPE 185
            FPE
Sbjct: 203 RFPE 206


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 656,075
Number of extensions: 26933
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 2
Length of query: 189
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,241,070
Effective search space: 135276630
Effective search space used: 135276630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)