BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0055.p (297 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312816|ref|YP_003776908.1| aminotransferase class III prot... 352 2e-98 gi|300311765|ref|YP_003775857.1| adenosylmethionine-8-amino-7-ox... 110 2e-25 gi|300310456|ref|YP_003774548.1| family II aminotransferase [Her... 99 3e-22 gi|300313929|ref|YP_003778021.1| omega-amino acid/pyruvate amino... 87 2e-18 gi|300313229|ref|YP_003777321.1| 4-aminobutyrate aminotransferas... 72 7e-14 >gi|300312816|ref|YP_003776908.1| aminotransferase class III protein [Herbaspirillum seropedicae SmR1] Length = 440 Score = 352 bits (903), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 172/216 (79%), Positives = 187/216 (86%) Query: 1 MTHVFHRYPKINLPVATAGEGIELIDSKGKRYLDACGGAAVSCLGHGHPRVLAAIHKQID 60 MTHVFHR P+ LP+A AGEG+ELID GKRY+DA GGAAVSCLGHGHPRV+ AI KQ+ Sbjct: 1 MTHVFHRNPRSKLPMAVAGEGMELIDQDGKRYIDASGGAAVSCLGHGHPRVIEAIRKQVG 60 Query: 61 ELAYAHTSFFTTAVAEQLADELSASAPGDLNHVYFLSGGSEAVEAALKLARQYFVESGQK 120 ELAYAHTSFFTTA AE+LA L+ +APG LNHVYFLSGGSEAVEAALKLARQY+VE GQ Sbjct: 61 ELAYAHTSFFTTAPAEELAAMLADAAPGSLNHVYFLSGGSEAVEAALKLARQYYVEVGQP 120 Query: 121 QRRHFIARRQSYHGNTLGALAIGGNAWRREAFLPLLTPAHHVAPCYAYREQLSGESDAQY 180 QRRH IARRQSYHGNTLGALAIGGNAWRRE F+P+L AHHV+PCYAYR + GESD QY Sbjct: 121 QRRHIIARRQSYHGNTLGALAIGGNAWRREMFMPMLIEAHHVSPCYAYRNRADGESDVQY 180 Query: 181 VQRLADELEAKILELGADEVAAFVAETVVGATAGAA 216 VQRLADELE KIL LGAD+V AFVAETVVGATAGA Sbjct: 181 VQRLADELEQKILSLGADQVIAFVAETVVGATAGAV 216 >gi|300311765|ref|YP_003775857.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 448 Score = 110 bits (274), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/220 (35%), Positives = 114/220 (51%), Gaps = 3/220 (1%) Query: 14 PVA-TAGEGIELIDSKGKRYLDACGGAAVSCLGHGHPRVLAAIHKQIDELAYAHTSFFTT 72 P+A T G+ L DS G+RYLDA V+ GH + R+ AA+ +Q+ +L +A + FT Sbjct: 32 PIAITRAHGLWLHDSDGRRYLDAISSWWVNLFGHTNTRINAALVEQLGQLEHAMLAGFTH 91 Query: 73 AVAEQLADELSASAPGDLNHVYFLSGGSEAVEAALKLARQYFVESGQKQRRHFIARRQSY 132 L+++L+A L H ++ S G+ AVE ALK++ + GQ + FI Y Sbjct: 92 EPVVALSEQLAALTGQALGHCFYASDGASAVEIALKMSVHAWRNGGQPDKNEFICIAGGY 151 Query: 133 HGNTLGALAIGGNAWRREAFLPLLTPAHHVAPCYAYREQLSGESDAQYVQRLADELEAKI 192 HG T+GAL + R A+ LL PA HVA R+ GES + R D++E +I Sbjct: 152 HGETVGALGVTDTPLFRSAYESLLRPA-HVAASPDARQAAPGESAEEVAARALDDVE-RI 209 Query: 193 LELGADEVAAFVAETVVGATAGAAWHXYRRRARPRTLCRR 232 L+ +AA + E +V AG A H R+LC R Sbjct: 210 LQQRQGRIAALIVEPLVQCAAGMAMHDPGYVRGLRSLCDR 249 >gi|300310456|ref|YP_003774548.1| family II aminotransferase [Herbaspirillum seropedicae SmR1] Length = 458 Score = 99.4 bits (246), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/202 (36%), Positives = 105/202 (51%), Gaps = 11/202 (5%) Query: 15 VATAGEGIELIDSKGKRYLDACGGAAVSCLGHGHPRVLAAIHKQIDELAYAHTSF-FTTA 73 + +G+G L D + K+ LDA G G+G V+ A +Q+ L YA F F + Sbjct: 31 ILKSGQGAYLTDHQDKQLLDAFSGLWCVNTGYGQESVIRAATEQMQRLPYATGYFHFASE 90 Query: 74 VAEQLADELSASAPGDLNHVYFLSGGSEAVEAALKLARQYFVESGQKQRRHFIARRQSYH 133 A LA +L +P L HVYF GGS+AV+AA++ Y G+ ++HFI+ ++ YH Sbjct: 91 PAILLAKKLVDISPASLQHVYFTLGGSDAVDAAIRYITHYHHSIGKPGKQHFISLQRGYH 150 Query: 134 G-NTLGALAIGGNAWRREAFLPLLTPAHHVAPC-YAYREQLSGES--DAQYVQRLADELE 189 G +++GA + LPL P H P Y YR +L G+ A VQ L D Sbjct: 151 GSSSVGAGLTALPNFHYHFNLPL--PTQHYLPSPYPYRSELQGDEAIIAASVQALRD--- 205 Query: 190 AKILELGADEVAAFVAETVVGA 211 K+ ELGAD VAAF E + G+ Sbjct: 206 -KVAELGADNVAAFFCEPIQGS 226 >gi|300313929|ref|YP_003778021.1| omega-amino acid/pyruvate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 442 Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 100/219 (45%), Gaps = 2/219 (0%) Query: 15 VATAGEGIELIDSKGKRYLDACGGAAVSCLGHGHPRVLAAIHKQIDELAYAHTSFFTTAV 74 + + EG+ D G LD G LGH HP++++A+ K + L YA + Sbjct: 31 MLVSAEGMHYRDDAGNTILDGTAGLWCVPLGHAHPKIVSAVQKSVATLDYAPSFQLGHPS 90 Query: 75 AEQLADELSASAPGDLNHVYFLSGGSEAVEAALKLARQYFVESGQKQRRHFIARRQSYHG 134 A +LA+ L A +V++ GSEAV+ ALK+A Y G R I R + YHG Sbjct: 91 AFELAERLKAYTGNRFGNVFYTGSGSEAVDTALKIALAYHRAKGNATRTRLIGRERGYHG 150 Query: 135 NTLGALAIGGNAWRREAFLPLLTP-AHHVAPCYAYREQLSGESDAQYVQRLADELEAKIL 193 G +++GG R+ F L P H+ + + + + +Y LADELE + Sbjct: 151 VGFGGMSVGGIGGNRKTFSTALLPGVDHLPHTHNLEKNAFTKGEPEYGAHLADELERLVT 210 Query: 194 ELGADEVAAFVAETVVGATAGAAWHXYRRRARPRTLCRR 232 A +AA + E V G+T G R R +C + Sbjct: 211 LHDASNIAAVIVEPVAGST-GVLIPPKGYLKRLREICTK 248 >gi|300313229|ref|YP_003777321.1| 4-aminobutyrate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 456 Score = 71.6 bits (174), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 93/205 (45%), Gaps = 34/205 (16%) Query: 21 GIELIDSKGKRYLDACGGAAVSCLGHGHPRVLAAIHKQIDELAYAHTSFFTTAVAEQLAD 80 G+ D G ++D G VS +G +PRV+ AI KQ + L H+ ++ +LA Sbjct: 56 GVTFKDPDGNTFIDLSAGVGVSSVGRCNPRVVEAIRKQSESL--MHSMEVNSSKRTELAA 113 Query: 81 ELSASAPGDLNH---VYFLSGGSEAVEAALKLARQYFVESGQKQRRHFIARRQSYHG--N 135 ++S P L +F GGS+A+EAA+K A++ R IA YHG N Sbjct: 114 KISEIMPDGLRGDCITFFTQGGSDALEAAVKFAKRV------TGRHQIIAFHGGYHGIWN 167 Query: 136 TLGALAIGGNAWRREAFLPLLTPAHHVAPCYAYR----------EQLSGESDAQYVQRLA 185 AL G A+R+ F P + H YAYR EQ++GE YV L Sbjct: 168 ASNALTT-GTAYRK-GFGPFMGGVIHAPYPYAYRFPFDTSHKSAEQIAGE----YVDYLL 221 Query: 186 DELEAKILELGADEVAAFVAETVVG 210 + AD+VAA + E V G Sbjct: 222 NTPYT-----AADDVAAVIVEPVQG 241 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 769,946 Number of extensions: 29774 Number of successful extensions: 114 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 107 Number of HSP's successfully gapped: 8 Length of query: 297 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 212 Effective length of database: 1,217,395 Effective search space: 258087740 Effective search space used: 258087740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)