BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0049.p
         (102 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312544|ref|YP_003776636.1| hypothetical protein Hsero_3247...    60   3e-11

>gi|300312544|ref|YP_003776636.1| hypothetical protein Hsero_3247
          [Herbaspirillum seropedicae SmR1]
          Length = 120

 Score = 60.1 bits (144), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 45/92 (48%), Gaps = 20/92 (21%)

Query: 11 FLATLALTYSAWVALSLAMDRHYADINGXTAAFAVCVRD--------------------S 50
          FL  L L Y AW AL+LAMDRHYAD++G  A  A  +R                      
Sbjct: 6  FLLALGLAYCAWSALALAMDRHYADVHGRGAEPAPALRQRLRWLGALALLASLAVAIGMQ 65

Query: 51 GWGIGPVAWLGTMTVAALLLVLQLCYAPKSVP 82
          GW IG V  +G +T+A +L VL L Y P   P
Sbjct: 66 GWSIGVVGGIGVLTLAGILQVLSLSYWPARTP 97


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.137    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 282,580
Number of extensions: 9262
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 1
Length of query: 102
Length of database: 1,619,870
Length adjustment: 71
Effective length of query: 31
Effective length of database: 1,283,685
Effective search space: 39794235
Effective search space used: 39794235
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 123 (52.0 bits)