BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0045.p (177 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel A... 117 5e-28 gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter AT... 112 1e-26 gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel A... 107 8e-25 gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 88 4e-19 gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPa... 73 1e-14 >gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 334 Score = 117 bits (293), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 63/115 (54%), Positives = 75/115 (65%), Gaps = 3/115 (2%) Query: 42 QAQILDLMRALKREHGTAILMITHDLGVVAEMCDRVVVMYAGQVVEQSSVRDLFDAPAHP 101 QAQIL ++R L++E G A++ ITHDLGVV+ + DRV VMYAGQVVE + V LF P HP Sbjct: 190 QAQILRMIRELQQEFGAAVIFITHDLGVVSRIADRVAVMYAGQVVETTDVAQLFAQPRHP 249 Query: 102 YTQALMRARPAL-DAVPGEPLEAIPGAVP-LPGSVESGCRFAARCPKVQERCRRD 154 YTQ L+ P +PG L+AIPG VP L G V SGC F RC K C RD Sbjct: 250 YTQGLLNCIPVRGKTLPGSHLQAIPGVVPSLVGQV-SGCAFRNRCAKADSGCERD 303 >gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 335 Score = 112 bits (281), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 60/132 (45%), Positives = 78/132 (59%), Gaps = 5/132 (3%) Query: 42 QAQILDLMRALKREHGTAILMITHDLGVVAEMCDRVVVMYAGQVVEQSSVRDLFDAPAHP 101 QAQIL+L L+ E G L I+HDLGVV + DRVV+MY G+VVE + V +LF P HP Sbjct: 203 QAQILNLFMDLRAELGLTYLFISHDLGVVEHVSDRVVIMYLGRVVESAPVAELFGQPNHP 262 Query: 102 YTQALMRARPALDAVPGEPLEAIPGAVPLPGSVESGCRFAARCPKVQERCRRDAPTLDAV 161 YTQAL+ P + A E AI G +P P + +GC F RCP +RCR + P L + Sbjct: 263 YTQALLAEVPRMGARKKE-FTAIKGEIPSPLNPPTGCHFNPRCPHATQRCREEQPLLREI 321 Query: 162 DDRAGDGHLARC 173 GH++ C Sbjct: 322 ----APGHMSAC 329 >gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 330 Score = 107 bits (266), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 60/136 (44%), Positives = 81/136 (59%), Gaps = 6/136 (4%) Query: 42 QAQILDLMRALKREHGTAILMITHDLGVVAEMCDRVVVMYAGQVVEQSSVRDLFDAPAHP 101 QAQIL ++ L R+HGTA++ ITHDL VVA + D V VMYAG++VEQ SV + DAP HP Sbjct: 191 QAQILSEVQKLARQHGTALIWITHDLSVVAGLADEVAVMYAGRIVEQGSVDAVLDAPLHP 250 Query: 102 YTQALMRARPALDAVPGEPLEAIPGAVPLPGSVESGCRFAARCPKVQERCRRDAPTLDAV 161 YTQ L+ + P+ + G L IPG P + C FAARC ++ ++C AP + Sbjct: 251 YTQGLIGSLPS-NNRRGARLRQIPGMTPNLLHLPPTCAFAARCERLSQQCLV-APAI--- 305 Query: 162 DDRAGDGHLARCWYPN 177 H RC++P Sbjct: 306 -SEPLPAHRVRCYHPT 320 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 88.2 bits (217), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 43/77 (55%), Positives = 59/77 (76%) Query: 42 QAQILDLMRALKREHGTAILMITHDLGVVAEMCDRVVVMYAGQVVEQSSVRDLFDAPAHP 101 QAQIL L+R+L++E ++ ITHD+GVVAE+ DRVVVM G+ VE+++V LF APAHP Sbjct: 199 QAQILQLIRSLQQEMQMGVIFITHDMGVVAEVADRVVVMCRGEKVEENAVNPLFAAPAHP 258 Query: 102 YTQALMRARPALDAVPG 118 YTQ+L+ A P L ++ G Sbjct: 259 YTQSLLAAVPRLGSMRG 275 Score = 75.5 bits (184), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/130 (37%), Positives = 66/130 (50%), Gaps = 14/130 (10%) Query: 28 RAMRRNMQMVFQDR---------QAQILDLMRALKREHGTAILMITHDLGVVAEMCDRVV 78 RA+ N ++V D QAQI++LM L+ E G + + I+HD+ VV + RV Sbjct: 473 RALALNPKIVIADESVSALDVSIQAQIVNLMLDLQAELGISFIFISHDMAVVERISHRVA 532 Query: 79 VMYAGQVVEQSSVRDLFDAPAHPYTQALMRARPALDAVPGEPLEAIPGAVPLPGSVESGC 138 VMY GQ+VE R +F+ P HPYT+ LM A P D P PG L + S Sbjct: 533 VMYLGQIVEIGPRRAIFENPQHPYTRKLMAAVPVAD-----PTLRQPGKKLLTDEIPSPI 587 Query: 139 RFAARCPKVQ 148 R PKV+ Sbjct: 588 RRVGDEPKVE 597 >gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPase [Herbaspirillum seropedicae SmR1] Length = 529 Score = 73.2 bits (178), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 34/70 (48%), Positives = 48/70 (68%) Query: 42 QAQILDLMRALKREHGTAILMITHDLGVVAEMCDRVVVMYAGQVVEQSSVRDLFDAPAHP 101 Q QIL L+ L+RE A+L+I+HDL +V DRV VM G++VE +SV +LF P P Sbjct: 185 QVQILALLNQLQREENMAVLIISHDLNLVRHFADRVGVMEKGKLVESASVAELFANPQQP 244 Query: 102 YTQALMRARP 111 YT+ L+++RP Sbjct: 245 YTRKLLQSRP 254 Score = 59.7 bits (143), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 39/66 (59%) Query: 42 QAQILDLMRALKREHGTAILMITHDLGVVAEMCDRVVVMYAGQVVEQSSVRDLFDAPAHP 101 Q Q+L L+ L+R HG A L ITHDL VV M +V+VM G+VVE + + P Sbjct: 454 QQQVLQLLAELQRRHGLAYLFITHDLAVVQAMAHQVIVMKDGKVVESGATAQVLQQPQQE 513 Query: 102 YTQALM 107 YT+ L+ Sbjct: 514 YTRRLV 519 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.136 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 550,342 Number of extensions: 21389 Number of successful extensions: 204 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 203 Number of HSP's successfully gapped: 13 Length of query: 177 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 98 Effective length of database: 1,245,805 Effective search space: 122088890 Effective search space used: 122088890 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 127 (53.5 bits)