BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0043.p (327 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel A... 283 1e-77 gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 273 1e-74 gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel A... 245 4e-66 gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPa... 226 3e-60 gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter AT... 206 2e-54 >gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 334 Score = 283 bits (725), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 161/326 (49%), Positives = 204/326 (62%), Gaps = 10/326 (3%) Query: 1 MLEVNNLKVEFVRNGKRVAPVDGVSFSVGANETVGLLGESGCGKSVTALSILRLFPMASK 60 +L+V NLKV+ + V G+ F V E + L+GESGCGKS+T+L+++ L P K Sbjct: 4 LLDVKNLKVDLPTENGMLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLP--RK 61 Query: 61 AQLSGSVQYNDGVRVSNMLEADDATLRSMRGKEIAMIFQEPMTSLNPLHRIGHQLREMLK 120 AQ S DGV + M D L +RGK +AMIFQEPMTSLNP + +G+QL E + Sbjct: 62 AQCSADHILFDGVDLHGM---PDKQLMQLRGKRMAMIFQEPMTSLNPSYTLGNQLCEAML 118 Query: 121 VHGNLSRKDIDAQVIAMLQRVGLPRAEQLVDDYPHSLSGGMRQRVMIAMALLCNPGLLIC 180 +SR + + + +L R G+ AE + YPH LSGG+RQRVMIAM+L+CNP L+I Sbjct: 119 QQPGVSRAEARERALYLLHRTGISNAEDRLRQYPHQLSGGLRQRVMIAMSLMCNPDLIIA 178 Query: 181 DEPTTALDVTIQAQILDLMRALKREHGTAILMITHDLGVVAEMCDRVVVMYAGQVVEQSS 240 DEPTTALDVTIQAQIL ++R L++E G A++ ITHDLGVV+ + DRV VMYAGQVVE + Sbjct: 179 DEPTTALDVTIQAQILRMIRELQQEFGAAVIFITHDLGVVSRIADRVAVMYAGQVVETTD 238 Query: 241 VRDLFDAPAHPYTQALMRARPAL-DAVPGEPLEAIPGAVP-LPGSVESGCRFAARCPKVQ 298 V LF P HPYTQ L+ P +PG L+AIPG VP L G V SGC F RC K Sbjct: 239 VAQLFAQPRHPYTQGLLNCIPVRGKTLPGSHLQAIPGVVPSLVGQV-SGCAFRNRCAKAD 297 Query: 299 ERCRRDAPTLDAVDDRAGDGHLARCW 324 C RD + A H ARC Sbjct: 298 SGCERDPQMVQQGSVTA--PHQARCL 321 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 273 bits (698), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 142/270 (52%), Positives = 195/270 (72%), Gaps = 3/270 (1%) Query: 1 MLEVNNLKVEFVRNGKRVAPVDGVSFSVGANETVGLLGESGCGKSVTALSILRLFPMASK 60 +L+VN+L V F + + V V +SF V ET+ ++GESG GKSV++L+I+RL Sbjct: 7 VLDVNHLSVRFSTSERTVDAVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIEHGGG 66 Query: 61 AQLSGSVQY--NDGVRVSNMLEADDATLRSMRGKEIAMIFQEPMTSLNPLHRIGHQLREM 118 SGS+Q+ G R+ ++ +AD+AT+RS+RG EIAMIFQEPMTSLNP+ +G Q+ E Sbjct: 67 KIASGSMQFLRRSGQRL-DLAQADNATMRSIRGAEIAMIFQEPMTSLNPVFTVGEQIAES 125 Query: 119 LKVHGNLSRKDIDAQVIAMLQRVGLPRAEQLVDDYPHSLSGGMRQRVMIAMALLCNPGLL 178 +++H L R A+ + ML+ V +P A++++ +PH LSGGMRQRVMIAMAL C P LL Sbjct: 126 IRLHQGLGRAAAQAEALRMLEMVRIPEAKRVLGRHPHQLSGGMRQRVMIAMALSCKPSLL 185 Query: 179 ICDEPTTALDVTIQAQILDLMRALKREHGTAILMITHDLGVVAEMCDRVVVMYAGQVVEQ 238 I DEPTTALDVTIQAQIL L+R+L++E ++ ITHD+GVVAE+ DRVVVM G+ VE+ Sbjct: 186 IADEPTTALDVTIQAQILQLIRSLQQEMQMGVIFITHDMGVVAEVADRVVVMCRGEKVEE 245 Query: 239 SSVRDLFDAPAHPYTQALMRARPALDAVPG 268 ++V LF APAHPYTQ+L+ A P L ++ G Sbjct: 246 NAVNPLFAAPAHPYTQSLLAAVPRLGSMRG 275 Score = 190 bits (483), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 123/306 (40%), Positives = 174/306 (56%), Gaps = 28/306 (9%) Query: 1 MLEVNNLKVEF-VRNG------KRVAPVDGVSFSVGANETVGLLGESGCGKSVTALSILR 53 +L+V +L F V++G +RV V+ VSF + A ET+ ++GESGCGKS T S+LR Sbjct: 312 ILKVRDLTTRFDVKSGIFGRVRQRVHAVEKVSFDLYAGETLAIVGESGCGKSTTGRSLLR 371 Query: 54 LFPMASKAQLSGSVQYNDGVRVSNMLEADDATLRSMRGKEIAMIFQEPMTSLNPLHRIGH 113 L +A G V++ ++ + + LR +R ++I IFQ+P SL+P +G+ Sbjct: 372 LVDIAG-----GKVEFGG----RDLAQLPRSELRQLR-RDIQFIFQDPFASLDPRMTVGY 421 Query: 114 QLREMLKVHGNLSRKDIDAQVIAMLQRVGL-PRAEQLVDDYPHSLSGGMRQRVMIAMALL 172 + E + VHG ++ +V A+L RVGL P Q YPH SGG RQR+ IA AL Sbjct: 422 SIMEPMLVHG--MKEGAQERVDALLTRVGLTPEHGQ---RYPHEFSGGQRQRICIARALA 476 Query: 173 CNPGLLICDEPTTALDVTIQAQILDLMRALKREHGTAILMITHDLGVVAEMCDRVVVMYA 232 NP ++I DE +ALDV+IQAQI++LM L+ E G + + I+HD+ VV + RV VMY Sbjct: 477 LNPKIVIADESVSALDVSIQAQIVNLMLDLQAELGISFIFISHDMAVVERISHRVAVMYL 536 Query: 233 GQVVEQSSVRDLFDAPAHPYTQALMRARPALDAVPGEPLEAIPGAVPLPGSVESGCRFAA 292 GQ+VE R +F+ P HPYT+ LM A P D P PG L + S R Sbjct: 537 GQIVEIGPRRAIFENPQHPYTRKLMAAVPVAD-----PTLRQPGKKLLTDEIPSPIRRVG 591 Query: 293 RCPKVQ 298 PKV+ Sbjct: 592 DEPKVE 597 >gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 330 Score = 245 bits (625), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 140/326 (42%), Positives = 193/326 (59%), Gaps = 11/326 (3%) Query: 2 LEVNNLKVEFVRNGKRVAPVDGVSFSVGANETVGLLGESGCGKSVTALSILRLFPMASKA 61 LEV NL+ F + VD VS SVG +GL+GESG GKSVT SIL + + Sbjct: 6 LEVRNLRTHFFTPEGVLPAVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVDAPGRI 65 Query: 62 QLSGSVQYNDGVRVSNMLEADDATLRSMRGKEIAMIFQEPMTSLNPLHRIGHQLREMLKV 121 + G + + +++ D +LR ++G IAMIFQ+PM +LNP+ ++ Q+ + + Sbjct: 66 -VGGEILFQG----RDLVRMDKTSLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLA 120 Query: 122 HGNLSRKDIDAQVIAMLQRVGLPRAEQLVDDYPHSLSGGMRQRVMIAMALLCNPGLLICD 181 H +SR+ L +G+ E+ + YPH LSGGMRQRV IA+A+L P L+I D Sbjct: 121 HSKVSRQQARELARDTLGMMGIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIAD 180 Query: 182 EPTTALDVTIQAQILDLMRALKREHGTAILMITHDLGVVAEMCDRVVVMYAGQVVEQSSV 241 EPTTALDVTIQAQIL ++ L R+HGTA++ ITHDL VVA + D V VMYAG++VEQ SV Sbjct: 181 EPTTALDVTIQAQILSEVQKLARQHGTALIWITHDLSVVAGLADEVAVMYAGRIVEQGSV 240 Query: 242 RDLFDAPAHPYTQALMRARPALDAVPGEPLEAIPGAVPLPGSVESGCRFAARCPKVQERC 301 + DAP HPYTQ L+ + P+ + G L IPG P + C FAARC ++ ++C Sbjct: 241 DAVLDAPLHPYTQGLIGSLPS-NNRRGARLRQIPGMTPNLLHLPPTCAFAARCERLSQQC 299 Query: 302 RRDAPTLDAVDDRAGDGHLARCWYPN 327 AP + H RC++P Sbjct: 300 LV-APAI----SEPLPAHRVRCYHPT 320 >gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPase [Herbaspirillum seropedicae SmR1] Length = 529 Score = 226 bits (575), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 125/261 (47%), Positives = 173/261 (66%), Gaps = 11/261 (4%) Query: 1 MLEVNNLKVEFVRNGKRVAPVDGVSFSVGANETVGLLGESGCGKSVTALSILRLFPMASK 60 +LEVNNL V F G V VD VSF++ E L+GESG GK+V++L++++L Sbjct: 5 LLEVNNLTVRF---GDTVV-VDRVSFAIAPGEKFALVGESGSGKTVSSLAVMQL---NQD 57 Query: 61 AQLSGSVQYNDGVRVSNMLEADDATLRSMRGKEIAMIFQEPMTSLNPLHRIGHQLREMLK 120 A+ GS+ DG ++L + ++ +RG ++AMIFQEPMT+LNPL IG+Q+ E+L Sbjct: 58 ARYEGSILL-DG---QDVLAKSERQMQQVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLM 113 Query: 121 VHGNLSRKDIDAQVIAMLQRVGLPRAEQLVDDYPHSLSGGMRQRVMIAMALLCNPGLLIC 180 H L+ +D + +A+L++ G+P + YPH LSGG RQR MIAMAL C P LLI Sbjct: 114 HHEGLNARDAARRAVALLEKTGIPEPARRALSYPHELSGGQRQRAMIAMALACKPKLLIA 173 Query: 181 DEPTTALDVTIQAQILDLMRALKREHGTAILMITHDLGVVAEMCDRVVVMYAGQVVEQSS 240 DEPTTALDVTIQ QIL L+ L+RE A+L+I+HDL +V DRV VM G++VE +S Sbjct: 174 DEPTTALDVTIQVQILALLNQLQREENMAVLIISHDLNLVRHFADRVGVMEKGKLVESAS 233 Query: 241 VRDLFDAPAHPYTQALMRARP 261 V +LF P PYT+ L+++RP Sbjct: 234 VAELFANPQQPYTRKLLQSRP 254 Score = 157 bits (397), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 99/238 (41%), Positives = 146/238 (61%), Gaps = 12/238 (5%) Query: 21 VDGVSFSVGANETVGLLGESGCGKSVTALSILRLFPMASKAQLSGSVQYNDGVRVSNMLE 80 VDGV + ET+G++GESG GKS +++LRL S A ++GS+++ DGV +S E Sbjct: 293 VDGVDLQLRRGETLGIVGESGSGKSTLGMALLRL----SAASVAGSIRF-DGVPIS---E 344 Query: 81 ADDATLRSMRGKEIAMIFQEPMTSLNPLHRIGHQLREMLKVHG-NLSRKDIDAQVIAMLQ 139 LR +R + + ++FQ+P SL+P + + E L++H + S + ++A L+ Sbjct: 345 RPQRELRPLRSR-MQVVFQDPFASLSPRRTVEQIVGEGLELHHPDRSAEQQRQAIVAALE 403 Query: 140 RVGLPRAEQLVDDYPHSLSGGMRQRVMIAMALLCNPGLLICDEPTTALDVTIQAQILDLM 199 VGL A +++ YPH SGG RQR+ IA AL+ P LL+ DEPT+ALDVT+Q Q+L L+ Sbjct: 404 EVGLSAA--VLERYPHEFSGGQRQRIAIARALVLQPELLLLDEPTSALDVTVQQQVLQLL 461 Query: 200 RALKREHGTAILMITHDLGVVAEMCDRVVVMYAGQVVEQSSVRDLFDAPAHPYTQALM 257 L+R HG A L ITHDL VV M +V+VM G+VVE + + P YT+ L+ Sbjct: 462 AELQRRHGLAYLFITHDLAVVQAMAHQVIVMKDGKVVESGATAQVLQQPQQEYTRRLV 519 >gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 335 Score = 206 bits (525), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 131/304 (43%), Positives = 168/304 (55%), Gaps = 20/304 (6%) Query: 21 VDGVSFSVGANETVGLLGESGCGKSVTALSILRLF-PMASKAQLSGSVQYNDGVRVSNML 79 +D V V E VGL+GESGCGKS L P + ++G D +S+ Sbjct: 45 LDKVDLKVLPGEVVGLVGESGCGKSTLGRVACGLLDPSDGQVLVNG----RDRASLSSRE 100 Query: 80 EADDATLRSMRGKEIAMIFQEPMTSLNPLHRIGHQLREMLKVHGNLSRKDIDAQVIAMLQ 139 EA+ A L ++ MIFQ P SLNP RI + E +V+G + D+D V L Sbjct: 101 EAE-ARL------QVQMIFQNPYASLNPRLRIDQIVGEAAQVNGKVE-GDLDDYVCQQLL 152 Query: 140 RVGLPRAEQLVDDYPHSLSGGMRQRVMIAMALLCNPGLLICDEPTTALDVTIQAQILDLM 199 R GL A L D YPH SGG RQR+ IA AL P +L+CDE ALDV+IQAQIL+L Sbjct: 153 RAGLDPA--LRDRYPHQFSGGQRQRIGIARALAVQPQMLVCDEAVAALDVSIQAQILNLF 210 Query: 200 RALKREHGTAILMITHDLGVVAEMCDRVVVMYAGQVVEQSSVRDLFDAPAHPYTQALMRA 259 L+ E G L I+HDLGVV + DRVV+MY G+VVE + V +LF P HPYTQAL+ Sbjct: 211 MDLRAELGLTYLFISHDLGVVEHVSDRVVIMYLGRVVESAPVAELFGQPNHPYTQALLAE 270 Query: 260 RPALDAVPGEPLEAIPGAVPLPGSVESGCRFAARCPKVQERCRRDAPTLDAVDDRAGDGH 319 P + A E AI G +P P + +GC F RCP +RCR + P L + GH Sbjct: 271 VPRMGARKKE-FTAIKGEIPSPLNPPTGCHFNPRCPHATQRCREEQPLLREI----APGH 325 Query: 320 LARC 323 ++ C Sbjct: 326 MSAC 329 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,019,773 Number of extensions: 42035 Number of successful extensions: 485 Number of sequences better than 1.0e-08: 110 Number of HSP's gapped: 363 Number of HSP's successfully gapped: 124 Length of query: 327 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 242 Effective length of database: 1,217,395 Effective search space: 294609590 Effective search space used: 294609590 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)