BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0037.p (460 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309398|ref|YP_003773490.1| threonine dehydratase [Herbaspi... 296 2e-81 gi|300313197|ref|YP_003777289.1| threonine dehydratase [Herbaspi... 145 6e-36 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 145 8e-36 gi|300309629|ref|YP_003773721.1| threonine dehydratase [Herbaspi... 135 8e-33 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 120 3e-28 >gi|300309398|ref|YP_003773490.1| threonine dehydratase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 296 bits (758), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 144/171 (84%), Positives = 155/171 (90%), Gaps = 2/171 (1%) Query: 225 IQRAAARLQGQILNTPCVESRTLSEIVGAQVFLKFENLQFTSSFKERGACNKLTDLAAAG 284 I+ AA RLQGQIL TPCVESRTLS+IVGAQVFLKFENLQFT+SFKERGACNKL D+AA+G Sbjct: 7 IEAAARRLQGQILETPCVESRTLSQIVGAQVFLKFENLQFTASFKERGACNKLVDVAASG 66 Query: 285 --VRGVIAMSAGNHAQGVAYHAQRLGLHALIVMPRFTPGVKIERTRGFGAEVVLHGDTLE 342 RGV+AMSAGNHAQGVAYHAQRLGL A IVMPRFTPGVKIERTRGFGA VVLHGDTLE Sbjct: 67 GGARGVVAMSAGNHAQGVAYHAQRLGLPATIVMPRFTPGVKIERTRGFGANVVLHGDTLE 126 Query: 343 EARAHAFALAQERGLTFVHPYDDEAIIAGQGTVALEMLDAVPDLDTLVVAI 393 AR HA+ LA++ GLTFVHPYDDEAIIAGQGTVALEM+ AVPDLD LVV+I Sbjct: 127 AARTHAYELAEKEGLTFVHPYDDEAIIAGQGTVALEMMKAVPDLDCLVVSI 177 >gi|300313197|ref|YP_003777289.1| threonine dehydratase [Herbaspirillum seropedicae SmR1] Length = 508 Score = 145 bits (366), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 78/157 (49%), Positives = 101/157 (64%), Gaps = 1/157 (0%) Query: 230 ARLQGQILNTPCVESRTLSEIVGAQVFLKFENLQFTSSFKERGACNKLTDLAAAGV-RGV 288 AR+ TP + TLS+ + +++ K E++Q SFK RGA NK+ L A + RGV Sbjct: 12 ARVYDVAQETPLELANTLSQRIDNRIYFKREDMQSVFSFKLRGAYNKMAHLTPAQLKRGV 71 Query: 289 IAMSAGNHAQGVAYHAQRLGLHALIVMPRFTPGVKIERTRGFGAEVVLHGDTLEEARAHA 348 I SAGNHAQGVA A RLG A+IVMP TP VKI+ + G EVVL GD+ +A HA Sbjct: 72 ICASAGNHAQGVALSAARLGCRAVIVMPTTTPQVKIDAVKARGGEVVLFGDSFTDAYEHA 131 Query: 349 FALAQERGLTFVHPYDDEAIIAGQGTVALEMLDAVPD 385 L +++ LTFVHP+DD +IAGQGTV +E+L PD Sbjct: 132 LTLEKKQKLTFVHPFDDPYVIAGQGTVGMEILRQHPD 168 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 145 bits (365), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 129/223 (57%) Query: 1 MKNLKIGTRLGIGFAAILVLMSIITAIGVWRLQSVGNMTDYMVNNALAKERLVNAFYKSI 60 MKNLKIG RL IGF A+L+LM+++ A+GVWRL S+G+ TD M AL KER ++ +I Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAI 60 Query: 61 ELNVGRIVAAAKNADPVQQKFYKDQIVATISKNNEYVKQMEATIVDDQGKAMLNEINERR 120 + N R A K+ D Q +++ QI A ++ ++ K++EA I D + K + +E+ + R Sbjct: 61 KENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLR 120 Query: 121 KVVIAANTEVFKEKDAGNEEGARKVVEEKLLPNSKLYLASIEKLSNMQSDAITTLTHQVN 180 A +F K AG++ AR++ + L+ Y + + ++ Q I +N Sbjct: 121 AAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAIN 180 Query: 181 DLFKTARLLMIVLGGIALVAGIGLAVFITRSITRPLVTAVGVA 223 +++ R +++ LG I +V G LA +TRSITRPL AV +A Sbjct: 181 RDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIA 223 >gi|300309629|ref|YP_003773721.1| threonine dehydratase [Herbaspirillum seropedicae SmR1] Length = 326 Score = 135 bits (340), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 77/166 (46%), Positives = 97/166 (58%), Gaps = 1/166 (0%) Query: 228 AAARLQGQILNTPCVESRTLSEIVGAQVFLKFENLQFTSSFKERGACNKLTDLAAAGVR- 286 AA R++ TP + SRT +GAQ+F K EN Q +FK RGA N LT A + Sbjct: 19 AAERIKPWAHRTPVLRSRTADTELGAQLFFKCENFQRMGAFKFRGAMNALTQFDATQRKH 78 Query: 287 GVIAMSAGNHAQGVAYHAQRLGLHALIVMPRFTPGVKIERTRGFGAEVVLHGDTLEEARA 346 GVI S+GNHAQG A AQ LG+ A+IVMP+ P K+ TRG+GAEVV + E+ A Sbjct: 79 GVITFSSGNHAQGTALAAQLLGIPAVIVMPQDAPAAKVAATRGYGAEVVTYDRYTEDREA 138 Query: 347 HAFALAQERGLTFVHPYDDEAIIAGQGTVALEMLDAVPDLDTLVVA 392 LA ER +T + PYD ++AGQGT LE+L LD L V Sbjct: 139 IGARLAAERKMTLIPPYDHPHVMAGQGTATLELLQETGPLDALFVC 184 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 120 bits (300), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 127/221 (57%) Query: 3 NLKIGTRLGIGFAAILVLMSIITAIGVWRLQSVGNMTDYMVNNALAKERLVNAFYKSIEL 62 N+ IG RL +GFA IL II IG+WRL V T M+ L ERL+ +Y ++ Sbjct: 6 NMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWYTNLVA 65 Query: 63 NVGRIVAAAKNADPVQQKFYKDQIVATISKNNEYVKQMEATIVDDQGKAMLNEINERRKV 122 + R +A AK++DP ++ ++ A+ + EY KQ+EA + + KA+ +I E RK+ Sbjct: 66 GIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIGELRKL 125 Query: 123 VIAANTEVFKEKDAGNEEGARKVVEEKLLPNSKLYLASIEKLSNMQSDAITTLTHQVNDL 182 +++ E+ K K AGN E A +++++ +PN+ Y ++ KL + Q + +++ + Sbjct: 126 YLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAREIDAI 185 Query: 183 FKTARLLMIVLGGIALVAGIGLAVFITRSITRPLVTAVGVA 223 +R L++VL G+ L+ GI A ++T IT+PL AV V+ Sbjct: 186 AAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVS 226 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,087,902 Number of extensions: 39863 Number of successful extensions: 209 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 198 Number of HSP's successfully gapped: 21 Length of query: 460 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 372 Effective length of database: 1,203,190 Effective search space: 447586680 Effective search space used: 447586680 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)