BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0035.p
         (621 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311837|ref|YP_003775929.1| O-linked N-acetylglucosamine tr...   639   0.0  

>gi|300311837|ref|YP_003775929.1| O-linked N-acetylglucosamine
           transferase [Herbaspirillum seropedicae SmR1]
          Length = 623

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/616 (51%), Positives = 431/616 (69%), Gaps = 17/616 (2%)

Query: 2   AFSLENFEYLAYSRQHEEAARELMALLSALDANYGLPGENFTAKPLSSVQADELNEHVVT 61
           AFSL+NFEYL Y+RQHE AAREL+ LL+ +D +YG     F      +V A  L +H+++
Sbjct: 8   AFSLDNFEYLCYARQHEAAARELVRLLALIDRHYGQLTGQFPLSVSPAVPAAALEQHILS 67

Query: 62  RIAAAISCLFADSEFQFSQLGFGQMLVMHRWLSSLFAASSFRNADHVVRAWNIRGKGNLR 121
           RI +AIS LF+D  F  S  GFGQ++   RWL++LFAAS F +ADH++RA N  G    +
Sbjct: 68  RITSAISALFSDPSFHISPDGFGQLIHFQRWLAALFAASPFIHADHILRALN-PGGPQAK 126

Query: 122 EVEISNRDLIKFCLLYSPESEIPMDLDAFWAHDKTLVASLCLALLSPRLLATPVAYEKRE 181
            VE+   DL+KFCLLYSPESE+P+D++  WA +  L A+L LAL+SPR L TP A+ KRE
Sbjct: 127 TVEVKPLDLVKFCLLYSPESELPLDVEMLWAQNPPLAAALFLALMSPRFLGTPAAHSKRE 186

Query: 182 QILPWLSARLEQIEDLAQLPAGILHDVYMHCSYARRADKHDIKKPINALIRRSIECAGIT 241
            +L WL  RL+Q++ LA LP  +LHDVYMHCSYA    +H IK  IN L+++++   G+ 
Sbjct: 187 ALLGWLPDRLQQLDSLAGLPVAVLHDVYMHCSYADLPQRHRIKGAINQLLQKTLRSEGLD 246

Query: 242 SLNTPIQADGPGGKRKPVLLVVVEWFSSAHSIYRTHSRTLEAARELFHVVGMGYASTVDE 301
            L+    A   G   KP++LV+VEWFS  HSIYRTHS+T+EAAR  FH+VG+G+ +  D 
Sbjct: 247 DLDQDGAARVDG---KPIMLVLVEWFSGGHSIYRTHSKTMEAARRHFHLVGLGFEANTDA 303

Query: 302 AGRAVFDEFVEIA-PGEILDQLKQIRGVAQEKAAQVFYMPSVGMFALTMFLSNLRLAPVQ 360
            GRAVFDEF+++  P +++  ++++R +A ++  +VFYMPSVGMF +TMF +NLRLAP+Q
Sbjct: 304 LGRAVFDEFIDLGKPSDLIGSIRRLREIAGQRQPRVFYMPSVGMFPITMFAANLRLAPLQ 363

Query: 361 AMALGHPATSHSPEMDYVVVEDDYVGDPACFSEQLLRLPSDGMPYRASAHAKQLDLPTEI 420
              LGHPAT+HSP +DY+ VE+D+VGDPACFSEQLLRLP+DG PYR SA     ++P   
Sbjct: 364 VAGLGHPATTHSPHIDYISVEEDFVGDPACFSEQLLRLPADGQPYRPSA--IPFEIPIRE 421

Query: 421 RETPDVVQIVVASTTMKLNPDFLRACQRILR--------EANSRIHFHFLIGQAQGMLIY 472
           R     VQ+ +A+TTMKLNP FL ACQ+I+         +   ++  HFL+GQAQG+L Y
Sbjct: 422 RSDRPEVQVAIAATTMKLNPRFLMACQQIVALAANPPAGQPGRQLRLHFLVGQAQGLL-Y 480

Query: 473 PQVKRVIGQFLGDAATVYPHQQYGAYMQVIARCDMFINPFPFGNTNGIIDTVSAGLVGVC 532
           PQ++R+I +++  +A VY HQ Y  Y+ +  +CDMF++P PFGNTNGIID  + GL GVC
Sbjct: 481 PQLRRLILRYV-PSAQVYAHQPYQQYLSIFNQCDMFLSPLPFGNTNGIIDAFTVGLPGVC 539

Query: 533 KTGPEVHEHIDEGLFGRLKFPQWLVTPTVDEYVKATVRLADDHALRNQLRRELTGVDAVQ 592
           KTGPEV EHIDEGLF R+  P W +  T+D+Y++A VR+A D+  R+ L   L    A+Q
Sbjct: 540 KTGPEVFEHIDEGLFRRVGLPDWTIAATLDDYIQAAVRMATDYPARSALYAHLADPRALQ 599

Query: 593 TIFNGRPEIMGQLMLA 608
            +F GRPE +G  ++A
Sbjct: 600 RLFEGRPESLGDALMA 615


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,874,409
Number of extensions: 76291
Number of successful extensions: 215
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 530
Effective length of database: 1,188,985
Effective search space: 630162050
Effective search space used: 630162050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 133 (55.8 bits)