BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0029.p
         (315 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313853|ref|YP_003777945.1| ornithine cyclodeaminase [Herba...   447   e-127

>gi|300313853|ref|YP_003777945.1| ornithine cyclodeaminase
           [Herbaspirillum seropedicae SmR1]
          Length = 306

 Score =  447 bits (1150), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/315 (77%), Positives = 266/315 (84%), Gaps = 9/315 (2%)

Query: 1   VKLITNQQVSELVTTADAVQAMREAFAARVRTSASNGVAQQARVRTSASNGVMLSMMGAV 60
           +K ++NQQ+SEL+TT DA+ AMREA       + +   A Q RVRTSASNGVMLSMMGAV
Sbjct: 1   MKFLSNQQISELLTTEDAIAAMREA------FAGAAEGAHQGRVRTSASNGVMLSMMGAV 54

Query: 61  IPDAGIAGAKVYTTIKGAFKFVITLFSTETGAPLATIEGDTMTGLRTAAATAVACDALAR 120
           IP AGIAGAKVYTTIKG F+FVI LFSTETGAPL T+EGD MTGLRTAAATAVACDALAR
Sbjct: 55  IPAAGIAGAKVYTTIKGQFRFVIQLFSTETGAPLCTMEGDAMTGLRTAAATAVACDALAR 114

Query: 121 KDVETLAVIGTGVQARSHIPALLQVRKFKEILIAGLSGQQELADEVTKTYGVPARVVEID 180
            D   LAVIGTGVQARSHIPALLQVR FKE+LIAG SGQQ LA+EVT+T GVPAR+V ID
Sbjct: 115 PDAGVLAVIGTGVQARSHIPALLQVRPFKEVLIAGRSGQQALAEEVTRTLGVPARMVSID 174

Query: 181 DAARQADVLVTVTRASTPLFSGDLLKPGAFVAAVGASKATVRELDDVAIKRAAALVVEWK 240
           +AA QADVLVTVTR++TPLF G+LL+PGAFVAAVGASKA VRELDD AI RAAAL VEWK
Sbjct: 175 EAAAQADVLVTVTRSATPLFDGELLRPGAFVAAVGASKANVRELDDTAIGRAAALFVEWK 234

Query: 241 PQAQIEAGDLVQCAPGTFDWANVWELGQAVDGSIGYKRKEGKDDDIVIYKAIGIGLEDVA 300
           PQAQ EAGDLVQCAPG FDWA V EL QAVDGS+ Y+R+    DDIVIYK IGIGLEDVA
Sbjct: 235 PQAQQEAGDLVQCAPGVFDWAQVMELAQAVDGSMPYQRRP---DDIVIYKGIGIGLEDVA 291

Query: 301 LAGLAYRKAAAQNGW 315
           LAGLAYRKA A+ GW
Sbjct: 292 LAGLAYRKACARYGW 306


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.130    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 862,794
Number of extensions: 34571
Number of successful extensions: 161
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 2
Length of query: 315
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,217,395
Effective search space: 280000850
Effective search space used: 280000850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)