BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0024.p (211 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309377|ref|YP_003773469.1| ABC transporter ATPase [Herbasp... 219 1e-58 gi|300313359|ref|YP_003777451.1| multidrug ABC transporter ATPas... 63 2e-11 gi|300312811|ref|YP_003776903.1| glutamate/aspartate ABC transpo... 61 7e-11 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 61 7e-11 gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC transpo... 57 9e-10 >gi|300309377|ref|YP_003773469.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 212 Score = 219 bits (558), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 111/206 (53%), Positives = 151/206 (73%), Gaps = 3/206 (1%) Query: 6 ILQATDLSFSYPDHEVFKNISLALPAGVTVIRGGDGRGKTSLIRVLAGELKASSGQLAIN 65 +L + L+FSYP ++F++ S + G+T++RGGDGRGKT+L+ +LAG + G L ++ Sbjct: 10 LLLVSRLNFSYPGLDLFQDFSARITPGLTLVRGGDGRGKTTLLNLLAGLMPVRDGVLELD 69 Query: 66 GVRLDEQAAQYKQQVYYVDPRTEAFDQLSVPDYFASVKARFPDFDDAALPELLEGLSLTP 125 G+RLD +A Y++QV+++DPR+EA++Q++ P+ FA++ R P FD A LP L EGLSLTP Sbjct: 70 GLRLDSEAENYRRQVFFIDPRSEAYEQMTPPEVFAALAERHPHFDHARLPALTEGLSLTP 129 Query: 126 HAEKKLFMLSTGSKRKVYLAGAFAAGAAVNLLDDPFASLDKSSINFVSEVLAGFAEQGDQ 185 H EKKLFMLSTGSKRKVYLA AFAA A + LLDDP+ASLD++SINFV+ +L AE Q Sbjct: 130 HLEKKLFMLSTGSKRKVYLAAAFAAQATLTLLDDPYASLDRASINFVAAMLNAHAEDARQ 189 Query: 186 SPQVWVASFYETPAEIAAREIIDLGD 211 + WV + YETP I IDLGD Sbjct: 190 A---WVVAMYETPEAIRLAGTIDLGD 212 >gi|300313359|ref|YP_003777451.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 303 Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 8/164 (4%) Query: 7 LQATDLSFSYPDHEVFKNISLALPAGVTV-IRGGDGRGKTSLIRVLAGELKASSGQLAIN 65 LQ D+ Y + +SLA+ G + G +G GKT+LI ++AG +A SG + I+ Sbjct: 4 LQINDIKKRYQSLQALGGVSLAIEEGEFFGLLGPNGAGKTTLISIIAGLNRADSGTVTIH 63 Query: 66 G--VRLDEQAAQYKQQVYYVDPRTEAFDQL-SVPDYFASVKARFP-DFDDAALPELLEGL 121 G V D +AA+ K V P+ FD +V + F +D + E++E L Sbjct: 64 GHDVVSDYRAARMKLGVV---PQELVFDPFFTVRETLRMQSGYFGLSSNDKWIDEVMENL 120 Query: 122 SLTPHAEKKLFMLSTGSKRKVYLAGAFAAGAAVNLLDDPFASLD 165 LT A+ + LS G KR+V +A A V +LD+P A +D Sbjct: 121 DLTNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVD 164 >gi|300312811|ref|YP_003776903.1| glutamate/aspartate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 60.8 bits (146), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 8/181 (4%) Query: 11 DLSFSYPDHEVFKNISLALPAG-VTVIRGGDGRGKTSLIRVLAGELKASSGQLAINGVRL 69 D+S Y D +V + + G V V+ G G GK++LI+ + G + I+GV++ Sbjct: 6 DVSKYYGDFKVLSACNAVIAKGEVVVVCGPSGSGKSTLIKTINALEPIQEGSITIDGVKV 65 Query: 70 DEQAA---QYKQQVYYVDPRTEAFDQLSVPD--YFASVKARFPDFDDAALPEL--LEGLS 122 ++++ + + +V V E F L++ A +K D+A + LE + Sbjct: 66 NDRSTNLPRLRSRVGMVFQHFELFPHLTIIQNLTLAQIKVLGRKKDEAHQHGMKYLERVG 125 Query: 123 LTPHAEKKLFMLSTGSKRKVYLAGAFAAGAAVNLLDDPFASLDKSSINFVSEVLAGFAEQ 182 L HA K LS G +++V +A A A L D+P ++LD +N V +V+ A++ Sbjct: 126 LKAHAGKYPGQLSGGQQQRVAIARALAMDPICMLFDEPTSALDPEMVNEVLDVMVELAQE 185 Query: 183 G 183 G Sbjct: 186 G 186 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 60.8 bits (146), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 13/154 (8%) Query: 22 FKNISLALPAG-VTVIRGGDGRGKTSLIRVLAGELKASSGQLAINGVRLDEQAAQY--KQ 78 ++SL PAG +T + G G GKT+L+R++AG SGQ+ ++G ++ +A++ ++ Sbjct: 18 LNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLLDG---EDASARHVRER 74 Query: 79 QVYYVDPRTEAFDQLSVPDYFA---SVKARFPDFDDAALPE----LLEGLSLTPHAEKKL 131 QV +V F ++V + A VK R +A + E LLE + L A++ Sbjct: 75 QVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKVKRLLELVQLDWLADRYP 134 Query: 132 FMLSTGSKRKVYLAGAFAAGAAVNLLDDPFASLD 165 LS G ++++ LA A A V LLD+PF +LD Sbjct: 135 PQLSGGQRQRIALARALAVEPRVLLLDEPFGALD 168 >gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 57.4 bits (137), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 91/186 (48%), Gaps = 8/186 (4%) Query: 6 ILQATDLSFSYPDHEVFKNISLALPAG-VTVIRGGDGRGKTSLIRVLAGELKASSGQLAI 64 +++ ++S Y +V + S ++ G V V+ G G GK++LI+ + G G + + Sbjct: 1 MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60 Query: 65 NGVRLDE---QAAQYKQQVYYVDPRTEAFDQLSVPDYF--ASVKARFPDFDDAALPEL-- 117 +GV + + ++ + ++ V E F LS+ + +K ++A L Sbjct: 61 DGVSVGDPKTNLSKLRARIGMVFQNFELFPHLSIRENLTIGQIKVLGRSKEEATEKGLKY 120 Query: 118 LEGLSLTPHAEKKLFMLSTGSKRKVYLAGAFAAGAAVNLLDDPFASLDKSSINFVSEVLA 177 L+ + L H +K LS G +++V +A A + L D+P ++LD IN V +V+ Sbjct: 121 LDRVGLLAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMV 180 Query: 178 GFAEQG 183 G A++G Sbjct: 181 GLAQEG 186 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 605,335 Number of extensions: 21607 Number of successful extensions: 313 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 347 Number of HSP's successfully gapped: 15 Length of query: 211 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 130 Effective length of database: 1,236,335 Effective search space: 160723550 Effective search space used: 160723550 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)