BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0011.p
         (476 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309347|ref|YP_003773439.1| chromosomal replication initiat...   820   0.0  

>gi|300309347|ref|YP_003773439.1| chromosomal replication initiator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 465

 Score =  820 bits (2119), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/476 (87%), Positives = 424/476 (89%), Gaps = 11/476 (2%)

Query: 1   MENFWQACSAKLEQELTPQQYSAWIKPLAPLDYEDGRLRIAAPNRFKLDWVKTQFAGRIT 60
           MENFWQACS KLEQELTPQQYSAWIKPL PLDYEDG LR+AAPNRFKLDWVKTQFA RIT
Sbjct: 1   MENFWQACSQKLEQELTPQQYSAWIKPLVPLDYEDGLLRVAAPNRFKLDWVKTQFANRIT 60

Query: 61  TIASEYWETQIEVQFVLDPRVGEARRAAAAAAPQGAGQGAGPGQPNRVGSMLDGYPTGIQ 120
            +A EYW+   EVQFVLDPR  + RR AAAAA      G G   PN     LD  P    
Sbjct: 61  ALACEYWDAPTEVQFVLDPRGNQGRRPAAAAAAGNGASGLG--LPNHEQLHLDPEPA--- 115

Query: 121 ESLVQPAPPPHVAPRQELSRINSVLTFDNLVTGKANQLARAAATQVANNPGVSYNPLFLY 180
                  P   VAPRQE SRIN VLTFDNLVTGKANQLARAAATQVANNPG SYNPLFLY
Sbjct: 116 ------QPVRAVAPRQEQSRINPVLTFDNLVTGKANQLARAAATQVANNPGTSYNPLFLY 169

Query: 181 GGVGLGKTHVIHAIGNQVLADNPNAKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDL 240
           GGVGLGKTH+IHAIGNQVL DNP AKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDL
Sbjct: 170 GGVGLGKTHIIHAIGNQVLVDNPGAKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDL 229

Query: 241 LLIDDIQFFGGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEISGMDDRLISRFDSGLT 300
           LLIDDIQFFGGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEISGMDDRLISRFDSGLT
Sbjct: 230 LLIDDIQFFGGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEISGMDDRLISRFDSGLT 289

Query: 301 VAIEPPELEMRVAILMKKATLEGVVLSDDVAFFVAKHLRSNVRELEGALRKILAYSRFHG 360
           VAIEPPELEMRVAILMKKA+ E VVLSDDVAFFVAKHLRSNVRELEGALRKILAYSRFHG
Sbjct: 290 VAIEPPELEMRVAILMKKASAEDVVLSDDVAFFVAKHLRSNVRELEGALRKILAYSRFHG 349

Query: 361 KDITIDVVKDALKDLLSVQNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIAM 420
           KDITIDVVK+ALKDLLSVQNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIAM
Sbjct: 350 KDITIDVVKEALKDLLSVQNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIAM 409

Query: 421 YLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKISADRTKNPECNHELHVLEQTLKG 476
           YLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKI+ADR K+PECNHELHVLEQTLKG
Sbjct: 410 YLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKIAADRAKSPECNHELHVLEQTLKG 465


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,359,532
Number of extensions: 52252
Number of successful extensions: 164
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 387
Effective length of database: 1,198,455
Effective search space: 463802085
Effective search space used: 463802085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)