BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0009.p
         (106 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314080|ref|YP_003778172.1| hypothetical protein Hsero_4803...   143   3e-36

>gi|300314080|ref|YP_003778172.1| hypothetical protein Hsero_4803
           [Herbaspirillum seropedicae SmR1]
          Length = 105

 Score =  143 bits (360), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/105 (67%), Positives = 83/105 (79%)

Query: 1   MSILAIAFPVEAAVPVAQSLIGASLALTRPLLGLGALVTLLMVFKPLLAGIMRAVVAFFV 60
           MS L +AFP EAA+P AQ+LIG   A  RP LGLGALVT +MVFKPL+ G+ +A V    
Sbjct: 1   MSFLNLAFPAEAAMPFAQTLIGMLAAYVRPALGLGALVTFVMVFKPLILGLAQAAVLLVK 60

Query: 61  PRKSFEQRVAAHRFSGVRMLNRMANDYSGSQPNFAAELRNLAARD 105
           PRKS EQR+ AH+FSG RMLNRMAN+YS +QPNFAAELRN+AARD
Sbjct: 61  PRKSLEQRILAHKFSGKRMLNRMANEYSMTQPNFAAELRNMAARD 105


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.137    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 261,175
Number of extensions: 7781
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 34
Effective length of database: 1,278,950
Effective search space: 43484300
Effective search space used: 43484300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 123 (52.0 bits)