BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0070.p
         (388 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310379|ref|YP_003774471.1| hypothetical protein Hsero_1046...    74   1e-14
gi|300310362|ref|YP_003774454.1| galactonate dehydratase [Herbas...    57   2e-09

>gi|300310379|ref|YP_003774471.1| hypothetical protein Hsero_1046
           [Herbaspirillum seropedicae SmR1]
          Length = 425

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 131/319 (41%), Gaps = 57/319 (17%)

Query: 105 GERSVAIGTIDMAVWDAVAKIEGKPLFQLLAD------------RYGNG--TPDR----- 145
           G   +A G +  A WD  AK EGKP+++L+AD            RY     TPD      
Sbjct: 106 GAIHLATGAVVNAAWDLWAKAEGKPVWKLVADMSPEELVRTIDFRYITDCITPDEALALL 165

Query: 146 ---------KIFVYAAGGYY-------YPGQNHDKLKDEMRSYIDRGYTVVKKKIGGASL 189
                    ++ V    GY        + G    KL+   +  ID+G+  VK K+G   L
Sbjct: 166 REKEAGKAERLRVLEQEGYPCYTTSAGWLGYEDAKLRRLCQEAIDQGFNHVKLKVG-RDL 224

Query: 190 DEDLRRIDSVLSVLQDGQKLAVDANGRFDLDTAVAYAKALSQYDLFWYEEPGDPLDFELQ 249
            +D RR+     VL   +KL +DAN  +++  A+ +   L+    ++ EEP  P D E  
Sbjct: 225 ADDKRRVTIAREVLGPERKLMIDANQVWEVHQAIDWVNQLAFAQPWFIEEPTSPDDVEGH 284

Query: 250 ATLRN-YYKNPMATGEDLFSMQDARNLIRYGGMRADRDWLQFDCALSYGLVEYLRTLDML 308
             +R       +ATGE    M   R L +   MR   D +Q D     G+ E L  + M 
Sbjct: 285 RKIREGIGAVKVATGE----MCQNRVLFKQFIMRDAIDVVQIDSCRLGGVNEILAVMLMA 340

Query: 309 REHGWSPKRCIPHGG------HQMSLNIAAGLGLGGNE-----SYPDLFQPYGGFPDGVK 357
            ++G   K   PH G      +   L++   L + G++      Y D    +  F D   
Sbjct: 341 AKYG---KVVCPHAGGVGLCEYVQHLSMIDYLCISGSKEGRVTEYVDHLHEH--FVDPCV 395

Query: 358 VENGHILLPELPGIGFEGK 376
           V+N   + P  PG   E K
Sbjct: 396 VKNAAYMPPSRPGFSIEMK 414


>gi|300310362|ref|YP_003774454.1| galactonate dehydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 382

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 134/322 (41%), Gaps = 47/322 (14%)

Query: 78  LVDDSGTNIDPHKIWNCMFTNEKPGGHGERSVAIGTIDMAVWDAVAKIEGKPLFQLLADR 137
           L+     NI+ H  W  ++      G      A+  ID A+WD   K  G P+ QLL   
Sbjct: 52  LIGKDPRNIEDH--WTVLYRGGFYRGGAIHMSALAGIDQALWDIKGKDLGVPVHQLLG-- 107

Query: 138 YGNGTPDRKIFVYAAGGYYYPGQNHDKLKDEMRSYIDRGYTVVKKKIGGASLDEDLRRID 197
              G     I VY+  G    G          +S + RG+T VK  + G    E+L+ ID
Sbjct: 108 ---GAVRNSIRVYSWIG----GDRPADTAAAAKSAVARGFTAVK--MNGT---EELQFID 155

Query: 198 S------VLSVLQDGQK-------LAVDANGRFDLDTAVAYAKALSQYDLFWYEEPGDPL 244
           S       L+ +Q  ++       + VD +GR     A A  K L  Y L + EEP    
Sbjct: 156 SHDKIELTLANVQAVREAVGPNVGIGVDFHGRVHKPMAKALIKELEPYKLMFIEEPVLSE 215

Query: 245 DFELQATLRNYYKNPMATGEDLFSMQDARNLIRYGGMRADRDWLQFDCALSYGLVEYLRT 304
           + E    + +    P+A GE L+S  D + ++  G +    D +Q D + + G+ E  + 
Sbjct: 216 NAEALKEIAHLTSTPIALGERLYSRWDFKRILSEGYV----DIIQPDVSHAGGITETRKI 271

Query: 305 LDMLREHGWSPKRCIPHGGHQMS--LNIAAG----------LGLGGNESYPDLFQPYGGF 352
             M   +  +     P G   ++  L + AG          LG+  NES  DL   Y   
Sbjct: 272 AMMAEAYDVALALHCPLGPIALASCLQVDAGSYNAFIQEQSLGIHYNES-NDLLD-YIRD 329

Query: 353 PDGVKVENGHILLPELPGIGFE 374
            +    E+G++ +P+ PG+G E
Sbjct: 330 KNVFAYEDGYVKIPQGPGLGIE 351


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.141    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,335,537
Number of extensions: 59184
Number of successful extensions: 160
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 2
Length of query: 388
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 301
Effective length of database: 1,207,925
Effective search space: 363585425
Effective search space used: 363585425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)