BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0066.p
         (364 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310016|ref|YP_003774108.1| cyclopropane-fatty-acyl-phospho...   199   3e-52
gi|300310389|ref|YP_003774481.1| cyclopropane-fatty-acyl-phospho...   163   2e-41

>gi|300310016|ref|YP_003774108.1|
           cyclopropane-fatty-acyl-phospholipid synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 407

 Score =  199 bits (506), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 121/353 (34%), Positives = 178/353 (50%), Gaps = 14/353 (3%)

Query: 13  NGSNPWDIQLHRAGVPERAFSQANLGLGEAYMDGDWDAEQLDEFFSRLLRTRLTDNIKPL 72
           +G+    +++  A       + +   LGEAY++G  + E   +   ++  +  ++ +K  
Sbjct: 42  SGTPEVTLKVPHASAITSLLTPSLANLGEAYVEGKIEVEGKVKSIIQVANSLASNTLKAE 101

Query: 73  RLVGHVLAAKFMNRQNLKRSRMVGEVHYDLGNDFYAAMLDSRMTYTCGYW-NTATTLEDA 131
             +G ++ +    R   KR     + HYD+ NDFY   LD  M Y+C Y+ N    L  A
Sbjct: 102 GRLGRMVRSVTHTR---KRDAEAIQYHYDVSNDFYKLFLDEHMVYSCAYFENGDEDLATA 158

Query: 132 QEAKLDLICRKLQLKPGMRVLDIGCGWGSFMAFAAERYGVEAVGVSISREQIALAKERYG 191
           Q  K+D I  K+QL+PG  +LDIGCGWG+ +  AA++YG   VGV++SR Q ALA+ER  
Sbjct: 159 QIKKIDHILEKIQLRPGQTLLDIGCGWGALVLRAAQKYGARCVGVTLSRNQYALARERVE 218

Query: 192 HLPL----DFRLQDYRELNERFDAIVSIGMFEHVGRRNYRTYMEVAHRCLADDGLFLLHT 247
              L    + RLQDYR++   FD I S+GMFEHVG +N  +Y     + LAD G+ + H 
Sbjct: 219 AAGLSDRIEIRLQDYRDVTGSFDRITSVGMFEHVGIKNLPSYFAQIRKLLADGGMAMNHG 278

Query: 248 IGKNQRKSSPDPW-----IDKYIFPNGDLPSIGQMGDAFDH-LFVVEDLHNFGADYDKTL 301
           I     ++   P+     IDKY+FP G+LP I  +            D+ N    Y +T 
Sbjct: 279 ITSTDIENGESPYGAGEFIDKYVFPAGELPHISTVLKTMQEGGLEAFDVENLRRHYARTC 338

Query: 302 MAWHSNFEAAWPRFEAQLGARFRRMWRYYLLSCAGAFRARDIQLWQWVLSKKG 354
             W  NFEA           +  R+WR YL   A  F    I L+Q V +K G
Sbjct: 339 GIWADNFEANTEAIHRVTDEKHYRIWRVYLAGSAYGFERDWISLYQVVCTKAG 391


>gi|300310389|ref|YP_003774481.1|
           cyclopropane-fatty-acyl-phospholipid synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 403

 Score =  163 bits (412), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/332 (35%), Positives = 165/332 (49%), Gaps = 15/332 (4%)

Query: 36  NLGLGEAYMDGDWDAEQLDEFFSRLLRTR--LTDNIKPLRLVGHVLAAKFMNRQNLKR-S 92
           ++G GEAY  G  D   L       +R R  L+  ++   L       + + R N +  S
Sbjct: 73  DIGFGEAYGHGWVDTPDLAALLRLAMRNRQVLSSAVEGGWLASWWYRLRHLLRSNTRSGS 132

Query: 93  RMVGEVHYDLGNDFYAAMLDSRMTYTCGYWNT-ATTLEDAQEAKLDLICRKLQLKPGMRV 151
           R     HYDLGNDFY   LD  M+Y+   ++    +LE AQ AK   I  +L L+ G RV
Sbjct: 133 RRNIHAHYDLGNDFYRLWLDPTMSYSSAIFSAPGQSLEQAQAAKYQRIVDQLGLRAGDRV 192

Query: 152 LDIGCGWGSFMAFAAERYGVEAVGVSISREQIALAKERYGHLPLD----FRLQDYRELNE 207
           L+IGCGWG F   AA R G+   GV+IS  Q+A A+ER     LD      L DYR+L+ 
Sbjct: 193 LEIGCGWGGFAEHAA-RLGIRVHGVTISPAQLAYAQERMRTQQLDHLAHLELCDYRDLDG 251

Query: 208 RFDAIVSIGMFEHVGRRNYRTYMEVAHRCLADDGLFLLHTIGKN----QRKSSPDPWIDK 263
           ++DAIVSI MFE VG R ++TY +     L   G  L+ +I       +R      +I +
Sbjct: 252 QYDAIVSIEMFEAVGERFWQTYFDTVCARLKAGGQALIQSITIEEAVFERYRDSADFIRE 311

Query: 264 YIFPNGDLPSIGQMGDAFDHL-FVVEDLHNFGADYDKTLMAWHSNFEAAWPRFEAQ-LGA 321
           +IFP G LPS  +             +  +FG DY +TL  WH +F A      AQ    
Sbjct: 312 FIFPGGMLPSHERFSRCAQRAGLATRERFHFGRDYAETLRRWHDSFLAQRETIAAQGFDE 371

Query: 322 RFRRMWRYYLLSCAGAFRARDIQLWQWVLSKK 353
           RFRR+W+ Y + C   F      + Q++L K+
Sbjct: 372 RFRRLWQLYYVFCEVGFDEGQTDVVQFLLHKE 403


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.140    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,194,102
Number of extensions: 50488
Number of successful extensions: 161
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 2
Length of query: 364
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 278
Effective length of database: 1,212,660
Effective search space: 337119480
Effective search space used: 337119480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)