BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0065.p
         (258 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313027|ref|YP_003777119.1| two component transmembrane sen...    56   3e-09

>gi|300313027|ref|YP_003777119.1| two component transmembrane sensor
           histidine kinase [Herbaspirillum seropedicae SmR1]
          Length = 454

 Score = 55.8 bits (133), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 6/137 (4%)

Query: 80  SAVYKTLLESTRAIPWK-IDWATMKFAYVGPQIEALLGWTPESWVSVED-WAARIHAEDR 137
           +A Y+ ++ +T AI +  +     +  +V      +LG+ P   +   + W   IH +D 
Sbjct: 32  NARYRHIIGNTPAIIYSSVPSGDFRLTFVSENASRVLGYEPCEMLDDPNFWFNHIHPDDT 91

Query: 138 EGVVNFCVAQSKAGADHEADYRAITRDGEHVWIRDVVHVVRKPDGEVEALIGFMFDITER 197
             + +  +A          +YR  T +G ++W+ D + ++R PDG  + +IG M DIT R
Sbjct: 92  AQIFS-SLAMLFVEDQKIYEYRFRTSNGSYLWMHDTLRLIRDPDGTPQEVIGLMTDITGR 150

Query: 198 KKNE---ARLAELQKEL 211
           K+ E    R AE Q++L
Sbjct: 151 KEMEDTLQRQAEEQRKL 167


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.130    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 807,640
Number of extensions: 32344
Number of successful extensions: 155
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,226,865
Effective search space: 214701375
Effective search space used: 214701375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)