BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0062.p
         (143 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311630|ref|YP_003775722.1| transmembrane protein [Herbaspi...   128   2e-31

>gi|300311630|ref|YP_003775722.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 144

 Score =  128 bits (321), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/139 (56%), Positives = 100/139 (71%)

Query: 2   INLVDFTPGLSLAGGLMIGGAIALLILFNGRIAGISGILGGLLGLPEKDVAWRAAFLIGM 61
           ++   FTP  +LAGG +IG A A+LIL NGR+AG+SGILGGLL     D AWRA FL+G+
Sbjct: 3   VDWTAFTPVTALAGGALIGLAAAILILANGRVAGVSGILGGLLQPRAGDRAWRAMFLLGL 62

Query: 62  MLAPVIAIGGGVGIDIEIQSGWGEILTAGFLVGIGTRYAGGCTSGHGVCGISRGSLRSVV 121
           + AP++   G     I I +G G+I+ AG LVG+GTRY  GCTSGHGVCG+SR SLRS V
Sbjct: 63  LAAPLLMRLGASLPPIHIDAGLGQIVLAGLLVGLGTRYGAGCTSGHGVCGLSRFSLRSAV 122

Query: 122 ATLTFMAAGFATVFVKLHL 140
           AT+ FM AGF +V++  H+
Sbjct: 123 ATVCFMMAGFVSVYLLRHV 141


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.147    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 291,253
Number of extensions: 8252
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,255,275
Effective search space: 82848150
Effective search space used: 82848150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)