BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0060.p (384 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbasp... 491 e-140 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 249 3e-67 gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 245 5e-66 gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC trans... 234 7e-63 gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 233 2e-62 >gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 491 bits (1264), Expect = e-140, Method: Compositional matrix adjust. Identities = 261/369 (70%), Positives = 295/369 (79%), Gaps = 14/369 (3%) Query: 19 TAAAEAISPTSATSLSVRNIRKRFGAFTALDNVSLDVRQGEMVCLLGPSGCGKTTLLRTI 78 TAA E +A LSVR + KRFG+FTALD VSL+VR+GEMVCLLGPSGCGKTTLLRTI Sbjct: 2 TAATE---EDAAVFLSVREVEKRFGSFTALDRVSLEVRRGEMVCLLGPSGCGKTTLLRTI 58 Query: 79 AGLEKQDDGAIHAHGTDISHLPPQSRDYGILFQSYALFPNLTVAQNVAYGLNARRLSRAQ 138 AGLE+QD G +HA G DIS LPPQ+RDYGILFQSYALFPNL+VA NVAYGL R+SR Q Sbjct: 59 AGLERQDSGRLHADGRDISQLPPQARDYGILFQSYALFPNLSVADNVAYGLG--RMSRQQ 116 Query: 139 MQQRVAGMLDMIGLSGSDKKYPGQLSGGQQQRVARARALAPSPSLLLLDEPLSALDAQVR 198 ++RV ML M+GL GS KYPGQLSGGQQQRVA ARALAPSPSLLLLDEPLSALDAQVR Sbjct: 117 KRERVTEMLSMVGLDGSQDKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVR 176 Query: 199 EHLQLEIRRLQKQFNITTLMVTHDQEEAMVMSDRIAIMQHGRIEQFDTPDRIYRHPATPF 258 EHLQLEIRRLQKQF ITTLMVTHDQEEAMVM+DRIA+MQHGRIEQF TP++IYR PATPF Sbjct: 177 EHLQLEIRRLQKQFRITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPEQIYRRPATPF 236 Query: 259 VADFIGQANWLPFQRLSPHQVSVGALTLTV--DEAPRQHMGNNDSGRLFCRPEAVDVLPA 316 VADFIGQANWLPF RLS QV+VG L L + DE+ R SGRLFCRPEAV + Sbjct: 237 VADFIGQANWLPFTRLSGSQVAVGGLHLEIQPDESDRA------SGRLFCRPEAVQLFSD 290 Query: 317 TDASNRFSARVVDQIYLGDRYRMMLELDELPGRRLMADVANDVRARLPDVSAQR-MWIAL 375 +NRF ARVVD+IYLGDRYR+ L D LPG+ L+ADV++ R+ + Q +W+ L Sbjct: 291 ESCANRFLARVVDRIYLGDRYRLALAADALPGQTLLADVSSQAHERVASLDTQDGLWVTL 350 Query: 376 PQHSLHLFA 384 P+ SL +FA Sbjct: 351 PRQSLQVFA 359 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 249 bits (635), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 132/286 (46%), Positives = 186/286 (65%), Gaps = 8/286 (2%) Query: 32 SLSVRNIRKRFGAFTALDNVSLDVRQGEMVCLLGPSGCGKTTLLRTIAGLEKQDDGAIHA 91 S+ V +I+KRFG+FTAL++VSL+ GE+ LLGPSGCGKTTLLR IAGLE D G + Sbjct: 2 SIEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLL 61 Query: 92 HGTDISHLPPQSRDYGILFQSYALFPNLTVAQNVAYGLNAR----RLSRAQMQQRVAGML 147 G D S + R G +FQ YALF ++TV +N+A+GL + R S A ++++V +L Sbjct: 62 DGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKVKRLL 121 Query: 148 DMIGLSGSDKKYPGQLSGGQQQRVARARALAPSPSLLLLDEPLSALDAQVREHLQLEIRR 207 +++ L +YP QLSGGQ+QR+A ARALA P +LLLDEP ALDA+VR+ L+ +RR Sbjct: 122 ELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRR 181 Query: 208 LQKQFNITTLMVTHDQEEAMVMSDRIAIMQHGRIEQFDTPDRIYRHPATPFVADFIGQAN 267 L + ++T++ VTHDQEEA+ ++D++ +M G++EQ TP+ +Y HPA+PFV F+G N Sbjct: 182 LHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGFLGNVN 241 Query: 268 WLPFQRLSPHQVSVGALTLTVDEAPRQHMGNNDSGRLFCRPEAVDV 313 L RL + G EAP + +G F RP +DV Sbjct: 242 -LFHGRLHEGVLDAGGARF---EAPGHDNIRDAAGVGFVRPHDLDV 283 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 245 bits (625), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 139/325 (42%), Positives = 197/325 (60%), Gaps = 16/325 (4%) Query: 26 SPTSATSLSVRNIRKRFGAFT-ALDNVSLDVRQGEMVCLLGPSGCGKTTLLRTIAGLEKQ 84 S A S+ + K F T AL + L + GE + LLGPSGCGKTT LR IAGLE Sbjct: 3 SHQEAVSIRLSQCAKSFANGTRALQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLEFP 62 Query: 85 DDGAIHAHGT-DISHLPPQSRDYGILFQSYALFPNLTVAQNVAYGLNARRLSRAQMQQRV 143 D+G G D++ LP + R G++FQ+YALFPN++V +N+AYG+ R+++ + +RV Sbjct: 63 DEGGRVLFGEEDVTMLPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIAAGERAERV 122 Query: 144 AGMLDMIGLSGSDKKYPGQLSGGQQQRVARARALAPSPSLLLLDEPLSALDAQVREHLQL 203 +L+M+ L G + QLSGGQ+QRVA ARALA P +LLLDEPL+ALDA++RE ++ Sbjct: 123 ERLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRS 182 Query: 204 EIRRLQKQFNITTLMVTHDQEEAMVMSDRIAIMQHGRIEQFDTPDRIYRHPATPFVADFI 263 ++ +L + IT + VTHDQ EAM + DRI +M+ G+I Q TP IY HPA FVA+FI Sbjct: 183 DLNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANDFVAEFI 242 Query: 264 GQAN----WLPFQRLSPHQVSVGALTLTVDEAPRQHMGNNDSGRLFCRPEAVDVLPATDA 319 G N + RL Q+ G L L D Q + RPE V+V+ T+A Sbjct: 243 GAMNRVDGIVAGDRL---QLPTGTLPLPPDAVAGQ------PAQALFRPEDVEVIDITEA 293 Query: 320 -SNRFSARVVDQIYLGDRYRMMLEL 343 ++ ++++ +LGDR R +E+ Sbjct: 294 DAHCLRGKLINTFFLGDRTRFEIEI 318 >gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 376 Score = 234 bits (598), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 130/311 (41%), Positives = 183/311 (58%), Gaps = 11/311 (3%) Query: 37 NIRKRF-GAFTALDNVSLDVRQGEMVCLLGPSGCGKTTLLRTIAGLEKQDDGAIHAHGTD 95 ++K + G + N+ LD+R+GE + LLGPSG GKTT L +AG E G I G Sbjct: 26 GVKKTYDGENLIVKNLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEIRLDGQL 85 Query: 96 ISHLPPQSRDYGILFQSYALFPNLTVAQNVAYGLNARRLSRAQMQQRVAGMLDMIGLSGS 155 ++ +PP R+ G++FQ+YALFP++T+AQNVAY L+ R++ RA + +V LDM+ + Sbjct: 86 LNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQALDMVQMGKF 145 Query: 156 DKKYPGQLSGGQQQRVARARALAPSPSLLLLDEPLSALDAQVREHLQLEIRRLQKQFNIT 215 +YP QLSGGQQQRVA AR L P L+L+DEPL ALD Q+REH+QLE++ L K+ +T Sbjct: 146 GDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKALHKRLGVT 205 Query: 216 TLMVTHDQEEAMVMSDRIAIMQHGRIEQFDTPDRIYRHPATPFVADFIGQANWLP--FQR 273 + VTHDQ EA+ MSDR+A+ G I+Q +Y +P FVA+FIG N + Sbjct: 206 FVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDNNRFKGSVES 265 Query: 274 LSPHQVSV----GALTLTVDEAPRQHMGNNDSGRLFCRPEAVDVLPATDAS-NRFSARVV 328 + +V GA LT R H G + + + RPE + + A N A + Sbjct: 266 VQGEHCTVRLTDGA-ALTGLNVHRAHAGQSITACV--RPERIRLAAGGSAEPNSIRASIA 322 Query: 329 DQIYLGDRYRM 339 IY GD R+ Sbjct: 323 GLIYFGDHVRV 333 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 233 bits (594), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 125/291 (42%), Positives = 184/291 (63%), Gaps = 9/291 (3%) Query: 32 SLSVRNIRKRFGAFTALDNVSLDVRQGEMVCLLGPSGCGKTTLLRTIAGLEKQDDGAIHA 91 ++S++ + K +G A+ N+ +V+ G+ LLGPSGCGK+T LR IAGL+K G+IH Sbjct: 3 AISLQGVCKHWGEAQAVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSIHI 62 Query: 92 HGTDISHLPPQSRDYGILFQSYALFPNLTVAQNVAYGLNARRLSRAQMQQRVAGMLDMIG 151 G D++ LPP R ++FQSYALFP+L+V N+ +G+ R+ RA + R+ + D++G Sbjct: 63 GGRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGYETRLKRVADILG 122 Query: 152 LSGSDKKYPGQLSGGQQQRVARARALAPSPSLLLLDEPLSALDAQVREHLQLEIRRLQKQ 211 L+ ++ P QLSGGQQQRVA RA+ + L+DEPLS LDAQ+R+ ++ EIR LQ+Q Sbjct: 123 LAHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQQQ 182 Query: 212 FNITTLMVTHDQEEAMVMSDRIAIMQHGRIEQFDTPDRIYRHPATPFVADFIGQ--ANWL 269 N+T + VTHDQ EAM M+D++ +++ GRIEQ P +Y PAT F A FIG N L Sbjct: 183 LNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTPPMNLL 242 Query: 270 PFQRLSPHQVSVGALTLTVDEAPRQHMGNNDSGRLFCRPEAVDVLPATDAS 320 P L PH L ++ + + +G +L RPE + + A+D+S Sbjct: 243 P---LEPH---AEGLVISGSDVILRDLGQT-PWQLGLRPEHIRLADASDSS 286 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,070,281 Number of extensions: 42311 Number of successful extensions: 484 Number of sequences better than 1.0e-08: 132 Number of HSP's gapped: 314 Number of HSP's successfully gapped: 148 Length of query: 384 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 297 Effective length of database: 1,207,925 Effective search space: 358753725 Effective search space used: 358753725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)