BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0059.p
         (151 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311546|ref|YP_003775638.1| Fe3+ ABC transporter permease [...    92   2e-20

>gi|300311546|ref|YP_003775638.1| Fe3+ ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 578

 Score = 92.4 bits (228), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/116 (50%), Positives = 78/116 (67%)

Query: 9   SLAVTPASAPRPASTFDRDAATANGLKYFLLLLLVLALALPLVAVLGQALLDHSGAWAGL 68
           +L+   +++ RPAS  DR       LK+ LL+LL L L  PL+ +L QA+L  +G WAG 
Sbjct: 11  TLSAETSTSTRPASVPDRSQWLPALLKWLLLMLLALGLVGPLLFILAQAVLTPAGEWAGS 70

Query: 69  APWSKLVANPNFFPMAARSVGVSAATALLVVPLAYLFAYGLQRTLVPFKGLWRAIA 124
            P+++L AN NF PM  RS+ VSA TA++ VPLAY+FAY LQRT +P KGLWR I 
Sbjct: 71  RPFAQLFANINFLPMLGRSLWVSAMTAVVTVPLAYVFAYALQRTCIPGKGLWRGIG 126


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.137    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 351,378
Number of extensions: 10511
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 74
Effective length of database: 1,255,275
Effective search space: 92890350
Effective search space used: 92890350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 126 (53.1 bits)