BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0058.p
         (425 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311546|ref|YP_003775638.1| Fe3+ ABC transporter permease [...   639   0.0  

>gi|300311546|ref|YP_003775638.1| Fe3+ ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 578

 Score =  639 bits (1647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/425 (77%), Positives = 364/425 (85%), Gaps = 1/425 (0%)

Query: 1   MNGSIYGFWGILLGEAFYTFPHALMILLSALSLADARLYDAASAMGAGSWKTFRTVTLPA 60
           M+GSIYGFWGILLGE FYTFPHALMILLSALS AD RLYDAA AMGA  W+ F TVTLPA
Sbjct: 155 MDGSIYGFWGILLGEVFYTFPHALMILLSALSQADGRLYDAAQAMGASRWRIFTTVTLPA 214

Query: 61  TRYGIFGAFCLVFTLAITDFGVPKIVGGAFSVLAVEAYKAVVGQQQFDRGALIGLLLLIP 120
           TRYGIFGA CLVFTL ITDFGVPKI GGA+SVLAVEAYKAVVGQQQF RGALIGLLLL+P
Sbjct: 215 TRYGIFGALCLVFTLTITDFGVPKITGGAYSVLAVEAYKAVVGQQQFGRGALIGLLLLVP 274

Query: 121 ALLTFCIDGWLQKRQRAQMSSRAEVLTPRRQWRRDAVYTLILLAISAALLLMIAVAVGAS 180
           ALLTF +D WLQ+RQRA MSSR+E   P+  WRRD    L +  I++A+L+MI VA+GAS
Sbjct: 275 ALLTFTLDAWLQRRQRASMSSRSETYVPQPDWRRDGANLLAVALIASAILMMIVVAMGAS 334

Query: 181 LVKLWPYNLKLTLMHYDFDNMDGGGWLAYWNSLRLAIGTSIVGTIVIFTGAWLMEKTRSN 240
           LVKLWPYNL+LTL HYDFDNMDGGGWLAYWNSLRLA GTS+ GT++IF GAWLMEKTR  
Sbjct: 335 LVKLWPYNLQLTLQHYDFDNMDGGGWLAYWNSLRLACGTSVAGTLLIFCGAWLMEKTRGQ 394

Query: 241 RLLDNALRFLSFLPMAVPGLVLGLGFVFFFNHPANPLNFLYGSMAILILCSVMHFYTTAH 300
             L   LR L FLPMAVPGLVLGLG + FFNHPANP NFLYG+M +L+LC V+HFYTTA 
Sbjct: 395 AWLSTLLRMLCFLPMAVPGLVLGLGSLLFFNHPANPFNFLYGTMTLLVLCCVVHFYTTAQ 454

Query: 301 LTAVTALKQIDPEFEAASASLKAPLLRTYLRITVPLCLPAVLEIFRYLFVSSMTTVSAVI 360
           LTAVTALKQ+DPEFEAAS SLK PLL+T++R+TVPLCLP +LEIFRYLFVSSMTTVSAVI
Sbjct: 455 LTAVTALKQLDPEFEAASLSLKVPLLKTFIRVTVPLCLPQLLEIFRYLFVSSMTTVSAVI 514

Query: 361 FLYSPNTVLAAIAVLNMDDAGDVGPAAAMSTLILLTSIAVSLLMHWGLGYWVRRAQAWRS 420
           FLY P+TVLA++AVLNMDDAGDVGPAAAMSTLILLTS A SLLMH G   W+ RAQAWR 
Sbjct: 515 FLYRPDTVLASVAVLNMDDAGDVGPAAAMSTLILLTSAAASLLMHLGGRRWLARAQAWRR 574

Query: 421 AGKKH 425
            G+ H
Sbjct: 575 -GRAH 578


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,097,684
Number of extensions: 35916
Number of successful extensions: 228
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 3
Length of query: 425
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 337
Effective length of database: 1,203,190
Effective search space: 405475030
Effective search space used: 405475030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 132 (55.5 bits)