BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0057.p
         (357 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311545|ref|YP_003775637.1| Fe3+ ABC transporter periplasmi...   611   e-176
gi|300309933|ref|YP_003774025.1| Fe3+ ABC transporter periplasmi...    70   3e-13

>gi|300311545|ref|YP_003775637.1| Fe3+ ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 371

 Score =  611 bits (1576), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 295/349 (84%), Positives = 321/349 (91%), Gaps = 7/349 (2%)

Query: 11  HHKKATMKPTTILKLLASVLGAGALLSA--HAATTLTVYTALEADQIKAYQAEFEKSNPD 68
           HH+K     T +  L ASV+GAG L SA  HAATTLTVYTALEADQIKAYQA F K+NPD
Sbjct: 28  HHEK-----TKLFSLFASVIGAGMLFSAQAHAATTLTVYTALEADQIKAYQAAFHKANPD 82

Query: 69  IEIKWVRDSTGIVTAKLLAEKANPKADVIWGLAASSLAILDKEGMLTPYAPKNLPAIEAK 128
           IEIKWVRDSTGIVTAKLLAEKANP+ADVIWGLAA+SLA+LDKEGML PYAP+ L AI+AK
Sbjct: 83  IEIKWVRDSTGIVTAKLLAEKANPQADVIWGLAATSLALLDKEGMLMPYAPQGLSAIDAK 142

Query: 129 YRSPANPPAWVGMDVWGSAICFNTVEAQKQGLPKPTSWADLTKPIYAGKIVMPHPASSGT 188
           YRS ANPPAWVGMDVW SAICFNTVEAQKQGLPKPTSWADLTKP+YAGKIVMP+PASSGT
Sbjct: 143 YRSAANPPAWVGMDVWASAICFNTVEAQKQGLPKPTSWADLTKPVYAGKIVMPNPASSGT 202

Query: 189 GYLDVTAWIQMMGEDKAWAYMDALHKNIGQYTHSGSKPCKQAATGEFPIGIAFEYRAVKT 248
           GYLDV+AW+QMMGEDK WAYMDALHKNIGQYTHSGSKPCKQAATGEFPIGIAFEYRAVKT
Sbjct: 203 GYLDVSAWLQMMGEDKGWAYMDALHKNIGQYTHSGSKPCKQAATGEFPIGIAFEYRAVKT 262

Query: 249 KKEGAPIDIILPSEGLGWDLEATAIVKGTRNLDAAKRLADFSASKDAMMQYEKNFAVLAV 308
           KKEGAPID+ILPSEGLGWD+EATAIVKG+++L+AAK+LADFSASK+AM  YEKNFAV+A+
Sbjct: 263 KKEGAPIDVILPSEGLGWDIEATAIVKGSKHLEAAKKLADFSASKEAMALYEKNFAVVAI 322

Query: 309 PGIAKPDPLLPADYEKRLTKNDFVWTSSNRDRILTEWSKRYESKAEKKQ 357
           PG+AKPD LL ADYEKRL KNDF W S+NRDRILTEWSKRYESK+EKKQ
Sbjct: 323 PGVAKPDELLSADYEKRLIKNDFTWASTNRDRILTEWSKRYESKSEKKQ 371


>gi|300309933|ref|YP_003774025.1| Fe3+ ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 335

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 106/237 (44%), Gaps = 24/237 (10%)

Query: 70  EIKWVRDSTGIVT-----------AKLLAEKANPKADVIWGLAASSLAILDKEGMLTPYA 118
           +IK +++ TG+             A+L AEKA+P AD  +   +  +   +K+ ++  Y 
Sbjct: 42  QIKAIKEKTGVTVPPDNKNSGQALAQLTAEKASPVADFAYLGVSFGIEAKNKD-LVAAYK 100

Query: 119 PKNLPAIEAKYRSPANPPAWVGMDVWGSAICFNTVEAQKQGLPKPTSWADLTKPIYAGKI 178
           P +   I    + P     W  +      I  N V+A K G P P SWADL KP Y G I
Sbjct: 101 PAHWNDIPNGLKDPDG--YWFTIHSGTMGIMVN-VDALK-GKPVPKSWADLQKPEYKGLI 156

Query: 179 VMPHPASSGTGYLDVTAWIQMMGE-----DKAWAYMDALHKNIGQYTHSGSKPCKQAATG 233
               PAS+  GY+   A  Q +G        A  Y   L KN  Q          +  +G
Sbjct: 157 GYLDPASAFVGYVGAVAINQALGGTLDDFSPAIGYFKNLQKN--QPIVPKQTSYARLISG 214

Query: 234 EFPIGIAFEYRAVKTK-KEGAPIDIILPSEGLGWDLEATAIVKGTRNLDAAKRLADF 289
           E PI + +++ A + K K+ A +  ++PSEG        A+VK   +   AK++ DF
Sbjct: 215 EIPILLGYDFDAYRAKYKDHANVAFVIPSEGTVTVPYVVALVKNAPHQAEAKKVLDF 271


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.130    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,106,857
Number of extensions: 45670
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 2
Length of query: 357
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 271
Effective length of database: 1,212,660
Effective search space: 328630860
Effective search space used: 328630860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)