BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0056.p
         (390 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311544|ref|YP_003775636.1| secreted glycine/D-amino acid o...   615   e-177

>gi|300311544|ref|YP_003775636.1| secreted glycine/D-amino acid
           oxidase [Herbaspirillum seropedicae SmR1]
          Length = 400

 Score =  615 bits (1585), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 292/381 (76%), Positives = 333/381 (87%)

Query: 5   NKDHIDVAVVGAGILGLAHAFAAVKRGLRVVVFERSSTPIGASIRNFGMGLVTGQPPGVM 64
           +  H D+AVVG+GILGLAHA+AAVKRGL+V VFER+ TP+GAS+RNFGMGLVTGQPPG+M
Sbjct: 9   DPQHFDLAVVGSGILGLAHAYAAVKRGLKVAVFERTGTPLGASVRNFGMGLVTGQPPGIM 68

Query: 65  LGLAKQSRALWLHLAQRANFSAREAGTLLFARTAAEHAVLEEFMIVRARQHGYDASLLEG 124
           L LA++SRA+WLHLA RA+FSAREAGTLLFAR+ AEH VL+EFM+VRARQ+ Y ASLLEG
Sbjct: 69  LDLARESRAIWLHLAARAHFSAREAGTLLFARSEAEHDVLQEFMMVRARQYDYRASLLEG 128

Query: 125 AQLDALYGGRFRHHRSALHGTQDLQLYSREAVPALVCYLQSQGVQFHFNTLVREARDGHL 184
            +L+ LY GRFRHHRS LHGT+DLQLYSREA+PALV YL SQGV F FNTLV  A DG L
Sbjct: 129 DKLNTLYNGRFRHHRSVLHGTEDLQLYSREAMPALVAYLHSQGVHFRFNTLVHGAGDGRL 188

Query: 185 STTAGEFRAERTIVCSGHDYQTLFADKLGEMNLKVCRLQMLRAAPQERLPLTHAVLTGLS 244
           STTAGEFRAER +VCSGHDY TLFAD+L  MNLK CRLQMLR   +E LPLTHAVLTGLS
Sbjct: 189 STTAGEFRAERVVVCSGHDYLTLFADRLQPMNLKQCRLQMLRLKSEETLPLTHAVLTGLS 248

Query: 245 CTHYGAFSDLPSAAGVHAEIEAQYPVLNRHGIHLLVSPTPYQELIIGDSHYYGVDAPPFN 304
           CTHYGAFSDLP+A  VHAEIEA  P+LN+HGIHLLVSPTPYQELI+GDSH+YG DAPPFN
Sbjct: 249 CTHYGAFSDLPTARAVHAEIEANTPLLNKHGIHLLVSPTPYQELIVGDSHHYGTDAPPFN 308

Query: 305 NEEIDQLMIGLAEETLGVKLNVLERWQGVYGSKGPGPFSATPIDGKTTVVLMHTGIGMSV 364
           +EEID+L++GL E TL  ++ V+ERWQGVYGSKGPGPFSA  ID +T+VVLMHTGIGMSV
Sbjct: 309 SEEIDELLLGLVEHTLATRVKVIERWQGVYGSKGPGPFSALAIDAQTSVVLMHTGIGMSV 368

Query: 365 GLALGERVIGALLDGAKLPEP 385
           GL LGERV+ ALL+GA+LP P
Sbjct: 369 GLGLGERVVKALLEGAELPSP 389


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,358,420
Number of extensions: 61488
Number of successful extensions: 246
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 303
Effective length of database: 1,207,925
Effective search space: 366001275
Effective search space used: 366001275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)