BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0054.p (273 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311570|ref|YP_003775662.1| GntR family transcription regul... 419 e-118 gi|300312446|ref|YP_003776538.1| GntR family transcription regul... 114 1e-26 gi|300313520|ref|YP_003777612.1| transcription regulator protein... 102 4e-23 gi|300313885|ref|YP_003777977.1| GntR family transcription regul... 101 8e-23 gi|300312368|ref|YP_003776460.1| GntR family transcription regul... 90 2e-19 >gi|300311570|ref|YP_003775662.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 258 Score = 419 bits (1076), Expect = e-118, Method: Compositional matrix adjust. Identities = 203/250 (81%), Positives = 220/250 (88%) Query: 24 RTQLSTDALALAAAGLGPVRQERFAERVYENLFHAIVEGKISVGSRLPSENDLATLFDVS 83 R S+D L LAAAGLGPVR ERFAERVYE LFHAIVEG+I+VGS+LPSENDLATLF+VS Sbjct: 9 RAGASSDILNLAAAGLGPVRPERFAERVYETLFHAIVEGRITVGSKLPSENDLATLFEVS 68 Query: 84 RPIVRQALDRLREDQLVESRRGSGTYVMDSPGVAGKPATAEPSERIGHIMNGLELRMVVE 143 RP+VRQALDRLREDQLVES RGSGTYV + PG+A AEP RIGHIMNGLELR+V+E Sbjct: 69 RPVVRQALDRLREDQLVESLRGSGTYVKEKPGLAPAQPGAEPETRIGHIMNGLELRLVIE 128 Query: 144 PECAYMAALRRSTADLTRMDELLTGFEEANAVGGIAHHFDFAFHEAIATATANLRFVQVL 203 PECA MAALRR+ DL RM+ LL GFE AN VGGIAHH+DF FHEAIATAT NLRFVQV+ Sbjct: 129 PECAAMAALRRNRQDLDRMERLLEGFEAANRVGGIAHHYDFGFHEAIATATGNLRFVQVM 188 Query: 204 KTLEYDVSHAVNMLRHLMHIQPWKRTQDAMDEHRNIFELIKRQDAEGARRAMRGHIENAR 263 KTLEYDVSHAVNMLRHLMHI PWKR+QDAMDEHR IFELI+ QDAEGARRAMRGHIENAR Sbjct: 189 KTLEYDVSHAVNMLRHLMHIAPWKRSQDAMDEHRQIFELIRVQDAEGARRAMRGHIENAR 248 Query: 264 SRMFNSRPGL 273 +RMFNSRPGL Sbjct: 249 TRMFNSRPGL 258 >gi|300312446|ref|YP_003776538.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 114 bits (284), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 82/234 (35%), Positives = 121/234 (51%), Gaps = 10/234 (4%) Query: 39 LGPVRQ-ERFAERVYENLFHAIVEGKISVGSRLPSENDLATLFDVSRPIVRQALDRLRED 97 L P R+ + ++ V L I G ++ G +LP+E+++ VSR +VR+A+ RL+ Sbjct: 11 LRPRRKPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAA 70 Query: 98 QLVESRRGSGTYVMDSP---GVAGKPATAEPSERIGHIMNGLELRMVVEPECAYMAALRR 154 LVE+R G GT+V+++ + PAT + ++ LELR+ +E E A +AA RR Sbjct: 71 GLVETRHGIGTFVLEAKKGGNINIDPATITT---MRDLLALLELRISLETETAGLAAARR 127 Query: 155 STADLTRMDELLTGFEEANAVGGIAHHFDFAFHEAIATATANLRFVQVLKTLEYDV--SH 212 + L + E L F GG DF FH AIA AT N F++++ L V Sbjct: 128 TEEQLQEIREALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRK 187 Query: 213 AVNMLRHLMHIQPWKRTQDAMDEHRNIFELIKRQDAEGARRAMRGHIENARSRM 266 +N L H Q EH +I+E I R DAE AR AMR H+ N+R R+ Sbjct: 188 RINTA-ELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERL 240 >gi|300313520|ref|YP_003777612.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 102 bits (253), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 112/223 (50%), Gaps = 7/223 (3%) Query: 47 FAERVYENLFHAIVEGKISVGSRLPSENDLATLFDVSRPIVRQALDRLREDQLVESRRGS 106 ++ V L I G GS+LP+E LA F VSR +VR+A+ RL+ + +VE R+GS Sbjct: 10 LSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQGS 69 Query: 107 GTYVMDSPGVAGKPATAEPSERIG--HIMNGLELRMVVEPECAYMAALRRSTADLTRMDE 164 G +V + G+ KP + +E ++ +ELR +E E A AA RRS DL ++ Sbjct: 70 GVFVTEQAGI--KPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAEDLQAIEA 127 Query: 165 LLTGFEEANAVGGIAHHFDFAFHEAIATATANLRFVQVLKTLEYDVSHAVNMLR-HLMHI 223 L A GG D AFH A+A AT N F++ L+ L + A + R + Sbjct: 128 ALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVTRGNEARY 187 Query: 224 QPWKRTQDAMDEHRNIFELIKRQDAEGARRAMRGHIENARSRM 266 + + R +EH I E I+ D AR A + H+ NA R+ Sbjct: 188 EDFSR--QVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRL 228 >gi|300313885|ref|YP_003777977.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 101 bits (251), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 106/222 (47%), Gaps = 6/222 (2%) Query: 48 AERVYENLFHAIVEGKISVGSRLPSENDLATLFDVSRPIVRQALDRLREDQLVESRRGSG 107 +E + + AI+ G++ +LP+E +LA ++ SR VR+AL RLR + +V SRRGSG Sbjct: 20 SEHICRQIIAAILRGELGENRKLPTEVELAQRYEASRTTVREALSRLRSEGIVVSRRGSG 79 Query: 108 TYVMDSPGVA--GKPATAEPSERIGHIMNGLELRMVVEPECAYMAALRRSTADLTRMDEL 165 YV P ++ G P A I + R VE A +AA R D+ M Sbjct: 80 NYVQRLPTLSSQGSPQIAS----IHDVERYYAFRECVEVGAAGIAATARQDEDVQAMRIA 135 Query: 166 LTGFEEANAVGGIAHHFDFAFHEAIATATANLRFVQVLKTLEYDVSHAVNMLRHLMHIQP 225 L + A G D A H AIA AT N F+ ++ + + + ++L Q Sbjct: 136 LQALQRAQLEGQTGVDEDLALHMAIARATRNPFFISTIEHALGPIRQCMELAQNLGSPQD 195 Query: 226 WKRTQDAMDEHRNIFELIKRQDAEGARRAMRGHIENARSRMF 267 +R Q DEH+ I + I A AMR HI +AR R+F Sbjct: 196 GERIQTIDDEHQAIIQAIAEGSPARAEAAMRAHIGHARLRIF 237 >gi|300312368|ref|YP_003776460.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 278 Score = 89.7 bits (221), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 117/228 (51%), Gaps = 14/228 (6%) Query: 47 FAERVYENLFHAIVEGKISVGSRLPSENDLATLFDVSRPIVRQALDRLREDQLVESRRGS 106 A+ V L I G+ + +RLPSE +L F VSR ++R+A+ RL+ + LV SRRGS Sbjct: 30 LADHVTSVLARQIRAGEFAPETRLPSEMELTERFSVSRTVIREAISRLKSEGLVGSRRGS 89 Query: 107 GTYVMDSPGVAGKPATA--------EPSERIGHIMNGLELRMVVEPECAYMAALRRSTAD 158 GT V+ + PAT + + I ++ +ELR VE E A +AA RR++A Sbjct: 90 GTVVLPA-----NPATPFRLDLDVDDGRDSIQAVLRVIELRRGVEGEMAALAAQRRTSAQ 144 Query: 159 LTRMDELLTGFEEANAVGGIAHHFDFAFHEAIATATANLRFVQVLKTLEYDVSHAVNMLR 218 + + L +EA A G DFAFH AI+ A+ N + +++ L + A+ + R Sbjct: 145 NLAIQQALQAIDEAAAAGRDGVPEDFAFHAAISNASHNPLYTSLVQFLSQFLHAAIRVAR 204 Query: 219 HLMHIQPWKRTQDAMDEHRNIFELIKRQDAEGARRAMRGHIENARSRM 266 + + + Q EH + E I DAE AR A H+EN+ R+ Sbjct: 205 -MNEARSNEFVQQVRAEHAALAEAISAGDAEAARAAALRHMENSAQRL 251 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 767,429 Number of extensions: 29092 Number of successful extensions: 123 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 109 Number of HSP's successfully gapped: 12 Length of query: 273 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 189 Effective length of database: 1,222,130 Effective search space: 230982570 Effective search space used: 230982570 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)