BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0052.p
         (113 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311569|ref|YP_003775661.1| NAD-dependent aldehyde dehydrog...   133   3e-33
gi|300310772|ref|YP_003774864.1| NAD-dependent aldehyde dehydrog...    64   4e-12
gi|300310471|ref|YP_003774563.1| NAD-dependent betaine aldehyde ...    55   2e-09

>gi|300311569|ref|YP_003775661.1| NAD-dependent aldehyde
          dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 477

 Score =  133 bits (335), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 73/88 (82%)

Query: 11 MKQHFINNRWTAPSSGESIPVTDPSDGEVFESLARGNAADIDLAVQAARKAYDNVWSRTS 70
          MKQHFI NRW AP+SGESIPV DPSDG+ F+++ARGNA DID AV+AAR AY+  W R S
Sbjct: 1  MKQHFIANRWVAPTSGESIPVLDPSDGQPFDAIARGNATDIDQAVRAARLAYEGAWGRLS 60

Query: 71 AADRSLLMMKLSQKLAEHQEELAQLEAR 98
          AA+RS L+MKL+ KL +HQEELAQLE R
Sbjct: 61 AAERSRLLMKLAYKLQDHQEELAQLEGR 88


>gi|300310772|ref|YP_003774864.1| NAD-dependent aldehyde
          dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 477

 Score = 63.5 bits (153), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 1/83 (1%)

Query: 13 QHFINNRWTAPSSGESIPVTDPSDGEVFESLARGNAADIDLAVQAARKAYDNVWSRTSAA 72
          Q FIN  WTA +SG +I V +P+  EV   +A  + AD+D A++AA K ++  W   SA 
Sbjct: 6  QLFINGEWTASASGRTIDVINPATEEVIGKIAHADRADLDRALEAASKGFET-WRNMSAF 64

Query: 73 DRSLLMMKLSQKLAEHQEELAQL 95
          +RS +M + +  L E  EE+A+L
Sbjct: 65 ERSKIMRRAADLLRERAEEVARL 87


>gi|300310471|ref|YP_003774563.1| NAD-dependent betaine aldehyde
          dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 486

 Score = 54.7 bits (130), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 11 MKQHFINNRWTAPSSGESIPVTDPSDGEVFESLARGNAADIDLAVQAARKAYDNVWSRTS 70
          +   +I+ +W  P   E   V  P+  E    +A GNAAD+D AVQAAR+A    W+ TS
Sbjct: 15 LDHFYIDGKWQPPQGSERAAVVAPATEERVCEIALGNAADVDQAVQAARRAIP-AWAATS 73

Query: 71 AADRSLLMMKLSQKLAEHQEELAQ 94
            +R+ L+ ++   L E  E  AQ
Sbjct: 74 PLERAALLGRVHALLLERSELFAQ 97


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.127    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 247,447
Number of extensions: 7795
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 5
Length of query: 113
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 40
Effective length of database: 1,274,215
Effective search space: 50968600
Effective search space used: 50968600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 124 (52.4 bits)