BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0047.p
         (504 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311562|ref|YP_003775654.1| hypothetical protein Hsero_2247...   779   0.0  

>gi|300311562|ref|YP_003775654.1| hypothetical protein Hsero_2247
           [Herbaspirillum seropedicae SmR1]
          Length = 495

 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/482 (79%), Positives = 414/482 (85%), Gaps = 1/482 (0%)

Query: 24  FANAFAELPPAFFTRLQPTPLPQPYLVGVSADAAALIGIDPATAASEGFIDVFTGNVIAQ 83
           F N FAELPPAF TRLQPTPLP PYLVG S DAAA I +    A    F+D+F GN IA 
Sbjct: 14  FGNRFAELPPAFHTRLQPTPLPAPYLVGFSEDAAASIALPRPQADDGDFLDIFAGNRIAP 73

Query: 84  HSKPLAAVYSGHQFGVWAGQLGDGRAILLGDLPARDG-GRMEIQLKGAGQTPYSRMGDGR 142
            S PL+AVYSGHQFGVWAGQLGDGRAI LGDLPA DG GR+E+QLKGAG TPYSRMGDGR
Sbjct: 74  GSTPLSAVYSGHQFGVWAGQLGDGRAITLGDLPAADGAGRIELQLKGAGPTPYSRMGDGR 133

Query: 143 AVLRSSIREFLCSEAMAGLGIPTTRALCVTGSDLQVRRETLETTAVVTRMSPSFIRFGSF 202
           AVLRSSIREFLCSEAMA LGIPTTRAL V GSD +V RET ET AVVTRM+PSFIRFGSF
Sbjct: 134 AVLRSSIREFLCSEAMAALGIPTTRALTVIGSDQRVLRETAETAAVVTRMAPSFIRFGSF 193

Query: 203 EHWYYNKRHDELKLLADNVIANFYPELLDADNPYRALLAEVTRRTAHLMAQWQAVGFMHG 262
           EHWYYN+R D+LKLLAD V+  FYPELL A NPY ALL EVTRRTA LMAQWQAVGFMHG
Sbjct: 194 EHWYYNQRFDDLKLLADTVLEQFYPELLQAGNPYAALLKEVTRRTATLMAQWQAVGFMHG 253

Query: 263 VMNTDNMSILGLTLDYGPFGFMEAFDARHICNHTDQQGRYSYQMQPRIGQWNCFALGQAL 322
           VMNTDNMSILGLTLDYGPFGFMEAFDARHICNHTD QGRYSYQMQPRIGQWNCFALGQA+
Sbjct: 254 VMNTDNMSILGLTLDYGPFGFMEAFDARHICNHTDSQGRYSYQMQPRIGQWNCFALGQAM 313

Query: 323 LPLIGSVEDTEAALGQYEAEFAAKNDDLLHAKLGLATRQADDDKLFESMFAILQAGHVDF 382
           LPLIG+VE+TEAAL  YEA F A+++ LL AKLGL TRQ +D++L E+MFAILQA HVDF
Sbjct: 314 LPLIGTVEETEAALADYEAIFQAQHEALLRAKLGLRTRQPEDEQLIEAMFAILQANHVDF 373

Query: 383 TLFFRRLSDLRAGDNGGDEALRDLFIERPSFDAWAGQYRARLQQENSVDAARKLAMDASN 442
           TLFFRRL DL+ G+   DE LRDL ++RP+FDAWA QYRARL+ E+S D AR+LAM A N
Sbjct: 374 TLFFRRLGDLQIGNAAHDEGLRDLILDRPAFDAWATQYRARLRAEDSDDQARRLAMHAVN 433

Query: 443 PKYVLRNYLAQVAIDKAQNKDFSEVAKLQEILRRPFDEQPEHDKYADLPPDWASHLEVSC 502
           PKYVLRNYLAQVAI++AQ KDFSEVA+LQ ILR PFDEQPEHDKYADLPPDWASHLEVSC
Sbjct: 434 PKYVLRNYLAQVAIERAQQKDFSEVARLQSILRHPFDEQPEHDKYADLPPDWASHLEVSC 493

Query: 503 SS 504
           SS
Sbjct: 494 SS 495


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,703,934
Number of extensions: 76453
Number of successful extensions: 219
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 415
Effective length of database: 1,198,455
Effective search space: 497358825
Effective search space used: 497358825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)