BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0039.p
         (914 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311556|ref|YP_003775648.1| phosphoribosylformylglycinamidi...  1448   0.0  

>gi|300311556|ref|YP_003775648.1| phosphoribosylformylglycinamidine
            synthase [Herbaspirillum seropedicae SmR1]
          Length = 1341

 Score = 1448 bits (3748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 693/793 (87%), Positives = 740/793 (93%), Gaps = 2/793 (0%)

Query: 1    VQGYHKPIMIAGGIGSINAKHTRKNDLPVGSLLIQLGGPGMRIGMGGSAASSMATGANTA 60
            V GYHKPIMIAGG+G+I+AKHT+KNDLPVGSLLIQLGGPGMRIGMGG AASSMATG N A
Sbjct: 426  VMGYHKPIMIAGGMGNISAKHTKKNDLPVGSLLIQLGGPGMRIGMGGGAASSMATGVNAA 485

Query: 61   DLDFDSVQRGNPEMERRAQEVINACWTMGDDNPILSIHDVGAGGLSNAFPEITNDAKRGA 120
            DLDFDSVQRGNPEMERRAQEVINACW +GDDNPI SIHDVGAGGLSNAFPEITNDAKRGA
Sbjct: 486  DLDFDSVQRGNPEMERRAQEVINACWALGDDNPIQSIHDVGAGGLSNAFPEITNDAKRGA 545

Query: 121  IFDLRKIPLEESGLAPKEIWSNESQERYVLAIAPEQLPLFRYLCERERCLFAVVGTATEE 180
            IFDLRK+PLEESGLAP+EIWSNESQERYVLAI PE L LF+YLCERER  FAVVGTATEE
Sbjct: 546  IFDLRKVPLEESGLAPREIWSNESQERYVLAILPEHLELFKYLCERERAPFAVVGTATEE 605

Query: 181  RQLKLVDPEQNNNPVDMPMDVLLGKPPKMHRDVQHVAVELPPVDLTGMDLVEVSHRVLRL 240
            RQLK++DPE NN+PVDMPMDVLLGKPPKMHRDV HV  +LPPVDLTGMDLVEV+ RVLRL
Sbjct: 606  RQLKVIDPEHNNSPVDMPMDVLLGKPPKMHRDVTHVEKQLPPVDLTGMDLVEVAQRVLRL 665

Query: 241  PTVADKSFLITIGDRSVGAMTVRDQMVGPWQVPVADCAVTAMSLEGYLGEAMAMGERTPL 300
            P VADKSFLITIGDRSVGAMTVRDQMVGPWQVPVAD AVTAM LEGY GEAMAMGERTPL
Sbjct: 666  PAVADKSFLITIGDRSVGAMTVRDQMVGPWQVPVADVAVTAMGLEGYRGEAMAMGERTPL 725

Query: 301  AVINAAASGRMAVGEAITNIAAAAIEKISDIKLSANWMAACGQPGQDAALFDTVKAIGME 360
            AVI+A ASGRMAVGEAITNIAAA I +I DIKLSANWMAACGQPGQDAALFDTVKA+GME
Sbjct: 726  AVIDAPASGRMAVGEAITNIAAAPIAEIGDIKLSANWMAACGQPGQDAALFDTVKAVGME 785

Query: 361  LCPALGVSIPVGKDSLSMRTTWKDDGAAKSVTSPVSLIVSSFAPVQDVRRTLTPQIRTDL 420
            LCPALGVSIPVGKDSLSMR+TW D+  AKSVTSPVSLIVS FAPV DVRR LTPQ+R D 
Sbjct: 786  LCPALGVSIPVGKDSLSMRSTWSDEEGAKSVTSPVSLIVSGFAPVTDVRRVLTPQLRKDK 845

Query: 421  GDTVLIAIDLGRGKNRMGASALTQVMQQIGNETPDVDSAEDLKGFFAAIQQLNKEGQLLA 480
            G+TVLI IDLGRGKNR+GASALTQVMQQIGNETPDVDSA+DLK FF AIQQLN E +LLA
Sbjct: 846  GETVLILIDLGRGKNRIGASALTQVMQQIGNETPDVDSADDLKAFFNAIQQLNTEDRLLA 905

Query: 481  YHDRSDGGLFATLTEMAFAGRSGLSINLDILAMESEHAADWGDSKNWTSQVGERRNELTL 540
            YHDRSDGGL+ATL EMAFAG +G+S+NLDIL ME EHAADWGDSKNWT+QV ERRNELTL
Sbjct: 906  YHDRSDGGLYATLAEMAFAGHTGISVNLDILTMEGEHAADWGDSKNWTTQVAERRNELTL 965

Query: 541  RALFNEELGAVIQVRAEQKSEVMNVLRAFNLGACSHIIGKPNNRDVIEFMRDAKNIYSQP 600
            RALF+EELGAVIQV AEQKS+VMNVLR++NLGACSHIIGKPN+RDVIEFMRDAKNIYSQP
Sbjct: 966  RALFSEELGAVIQVPAEQKSDVMNVLRSYNLGACSHIIGKPNDRDVIEFMRDAKNIYSQP 1025

Query: 601  RSALHRLWSETSWRIARLRDNPACADAEYERLLDAADPGITPKLTFDPQEDIAAPFLNIG 660
            R+ LHR+WSETSWRIARLRDNPACADAEY+RLLDA DPG+TPKL+FDPQEDIAAP+L++G
Sbjct: 1026 RAELHRVWSETSWRIARLRDNPACADAEYDRLLDATDPGMTPKLSFDPQEDIAAPYLSLG 1085

Query: 661  --ARPRVAILREQGVNSHIETAYVMHKSGFESVDVHMSDLIAGRAKLDAFKGLIAVGGFS 718
              ARP+VAILREQGVNSHIETAY MHK+GF +VDVHMSDLIA RAKLD FKG IAVGGFS
Sbjct: 1086 AAARPKVAILREQGVNSHIETAYAMHKAGFTAVDVHMSDLIANRAKLDDFKGFIAVGGFS 1145

Query: 719  YGDVLGAGEGWAKTILFNAQLAEQFSQFFQRQDTFSLGICNGCQMMSNLKSIIPGAQDWP 778
            YGDVLGAGEGWAKTILFNAQLAEQFS+FFQRQDTFSLGICNGCQMMSNLKS+IPGA+ WP
Sbjct: 1146 YGDVLGAGEGWAKTILFNAQLAEQFSRFFQRQDTFSLGICNGCQMMSNLKSMIPGAEAWP 1205

Query: 779  KFTRNKSEQFEAR 791
            KFTRNKSEQFEAR
Sbjct: 1206 KFTRNKSEQFEAR 1218


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,890,439
Number of extensions: 126134
Number of successful extensions: 330
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 1
Length of query: 914
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 820
Effective length of database: 1,174,780
Effective search space: 963319600
Effective search space used: 963319600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 135 (56.6 bits)