BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0033.p
         (103 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310531|ref|YP_003774623.1| periplasmic or secreted lipopro...   127   2e-31
gi|300314015|ref|YP_003778107.1| hyperosmotically inducible peri...    61   2e-11

>gi|300310531|ref|YP_003774623.1| periplasmic or secreted
           lipoprotein [Herbaspirillum seropedicae SmR1]
          Length = 109

 Score =  127 bits (319), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 80/103 (77%)

Query: 1   MIMTKRFAAFFFALFVLALAGCGSTPQQASTGQYIDDSVITTKVKAAIFEEPNLKTLEIG 60
           M +TKRF  FF ALF+++L GC S P +  TG+Y+DD+VITTKVKAAIF E +LK+ EI 
Sbjct: 6   MSLTKRFIGFFLALFMVSLVGCASGPNKEGTGEYVDDAVITTKVKAAIFNEKDLKSTEIN 65

Query: 61  VETFKGIVQLSGFVNNSAASLKAAEVTRKVEGVKGVKNSLVVK 103
           VET+KG+VQLSGFV++S A+ +A E+ R V+GV  V+N L +K
Sbjct: 66  VETYKGVVQLSGFVSSSTAAARATELARGVKGVVSVRNDLRLK 108


>gi|300314015|ref|YP_003778107.1| hyperosmotically inducible
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score = 60.8 bits (146), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 2/79 (2%)

Query: 25  TPQQASTGQYIDDSVITTKVKAAIFEEPNLKTLEIGVETFKGIVQLSGFVNNSAASLKAA 84
           T Q+A  G YIDDSVIT KVKAA+ E+  +  ++I V T  G+V L G V ++     A 
Sbjct: 34  TAQKA--GAYIDDSVITAKVKAALVEDKQVSAMKINVTTKDGVVTLKGSVPSAELGQHAL 91

Query: 85  EVTRKVEGVKGVKNSLVVK 103
           ++   +EGV+ VK+ L VK
Sbjct: 92  QLVAGIEGVRDVKSDLTVK 110


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 207,232
Number of extensions: 5830
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 2
Length of query: 103
Length of database: 1,619,870
Length adjustment: 71
Effective length of query: 32
Effective length of database: 1,283,685
Effective search space: 41077920
Effective search space used: 41077920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)