BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0029.p
         (297 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311553|ref|YP_003775645.1| drug/metabolite transporter (DM...   462   e-131
gi|300313129|ref|YP_003777221.1| drug/metabolite transporter (DM...    68   8e-13

>gi|300311553|ref|YP_003775645.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 314

 Score =  462 bits (1188), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/292 (78%), Positives = 251/292 (85%)

Query: 1   LGIIFLISALWTLSLLDTAGKLLGMAGYHVVMIAWMRYSINTVFMAATLMPLYKRRHGRS 60
           LGI+FLIS LWTLSLLDTAGKLL +AGYHVVMIAWMRY+IN  FMAATL PLY+RRHGRS
Sbjct: 17  LGILFLISGLWTLSLLDTAGKLLALAGYHVVMIAWMRYTINLFFMAATLAPLYRRRHGRS 76

Query: 61  ILHSTRPRLQVLRALALLLSTLIFFSVLKIVPLAEGTAMNFCAPLIVLAVSPWLLGETTY 120
           IL S R  LQ+ R   LL STLIFFSVLKIVPLAEGTAMNFCAPLIVLA+SPWLLGE +Y
Sbjct: 77  ILQSNRLGLQLGRGALLLGSTLIFFSVLKIVPLAEGTAMNFCAPLIVLAISPWLLGERSY 136

Query: 121 ISRWVAVAVGFAGMLIVIRPGGDIPAHGVVLGLLSAATYATVSILNRKANQADDPMVTLF 180
           +SRW+AV VGF GMLIVIRP GDIP +GV LGL+SA T A +SILNRKA+QAD+PMVTLF
Sbjct: 137 LSRWIAVLVGFTGMLIVIRPSGDIPPYGVALGLISALTQALLSILNRKASQADNPMVTLF 196

Query: 181 YGGLVGMVVSSLMVPFFWSPHTPDATEWMILASTGITSTIGHFFMNSAYRHAEASVLTPF 240
           YG LVG VVS+L+VPFFW+ HTP   E  IL STGITSTIGHF  NSAYRHAEASVLTPF
Sbjct: 197 YGALVGSVVSTLLVPFFWTSHTPTMVELAILVSTGITSTIGHFLQNSAYRHAEASVLTPF 256

Query: 241 AYSQIISASAMGWLVFNQFPDAVTILGIAIICASGMGIAYVEHRRAHPLRAA 292
            Y+QIISA  MGWLVF QFPD VT+LGIAIICASG+GIAY+EH+RAHPL  A
Sbjct: 257 FYAQIISACGMGWLVFGQFPDRVTVLGIAIICASGIGIAYIEHKRAHPLPPA 308


>gi|300313129|ref|YP_003777221.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score = 68.2 bits (165), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 106/236 (44%), Gaps = 21/236 (8%)

Query: 67  PRLQVLRALALLLSTLIFFSVLKIVPLAEGTAMNFCAPL---IVLAVSPWLLGETTYISR 123
           PR  ++R    ++S  ++F    ++P+A  T +N+ + +   ++L  + W  G   +   
Sbjct: 60  PRDHLIRGGVGVISLWLWFYSFSLLPVATATTLNYMSSIWIAVMLFAAAWWQGNKKF--E 117

Query: 124 W---VAVAVGFAGMLIVIRPGGDIPAH-GVVLGLLSAATYATVSILNRKANQADDPMV-T 178
           W     V + F G+ +++RP  D     G  + L S    A V +  RK     +P    
Sbjct: 118 WGLAATVVLSFIGVALLMRPSLDADQLLGGAISLFSGVLSALVYLQVRKLGLLGEPEYRV 177

Query: 179 LFY-------GGLVGMVVSSLMVPFFWSPHTPDATEWMILASTGITSTIGHFFMNSAYRH 231
           +FY        GLVG V +   VP  W  H+      +I+   G+T+T+    M  AYR 
Sbjct: 178 VFYFSLTGVLAGLVGSVATG-RVPL-WHSHSWQGAALVIM--IGLTATLAQIAMTRAYRL 233

Query: 232 AEASVLTPFAYSQIISASAMGWLVFNQFPDAVTILGIAIICASGMGIAYVEHRRAH 287
               V     Y+ I+ +S  G LV+N  P  +  LG+ +I ASG+   Y  HR + 
Sbjct: 234 GNTLVTANLQYTGIVFSSLFGVLVWNDAPGWLGWLGMGVILASGLLATYHNHRSSQ 289


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 929,057
Number of extensions: 36121
Number of successful extensions: 191
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 2
Length of query: 297
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 212
Effective length of database: 1,217,395
Effective search space: 258087740
Effective search space used: 258087740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)