BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0028.p (240 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbasp... 358 e-100 gi|300312088|ref|YP_003776180.1| lipoprotein release ABC transpo... 191 4e-50 gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC trans... 169 3e-43 gi|300311701|ref|YP_003775793.1| export system ATP-binding subun... 149 2e-37 gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 149 3e-37 >gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 358 bits (919), Expect = e-100, Method: Compositional matrix adjust. Identities = 188/237 (79%), Positives = 204/237 (86%), Gaps = 6/237 (2%) Query: 1 VSSSSAIANTSAIEVVNLSKRVADAAAEATAVSKAGELAILRDVNFNVQAGTTLAIVGAS 60 VS+++ A AIEV+ LSK VADA+A AG L IL ++F V AGTTLAIVGAS Sbjct: 3 VSATAVAAAIPAIEVLQLSKHVADASA------PAGRLTILDGIDFTVAAGTTLAIVGAS 56 Query: 61 GSGKSTLLGLLAGLDTPSDGTVRIDGVDIFALDEDGRAALRKHKLGFVFQSFQLLGHLNA 120 GSGKSTLLGLLAGLDTPS+G+VR+DG DI+ALDEDGRA LRK KLGFVFQSFQLLGHLNA Sbjct: 57 GSGKSTLLGLLAGLDTPSEGSVRLDGEDIYALDEDGRALLRKRKLGFVFQSFQLLGHLNA 116 Query: 121 VENVMLPLELRGDADARGKAERMLARVGLGSRLKHYPKYLSGGEQQRVALARAFVTEPPL 180 +ENVMLPLELRGDA AR KA ML RVGLGSRLKH PKYLSGGEQQRVALARAFVTEPPL Sbjct: 117 LENVMLPLELRGDARAREKATEMLGRVGLGSRLKHSPKYLSGGEQQRVALARAFVTEPPL 176 Query: 181 LLADEPTGSLDATTGEAVIRLMFELNKERGSTLVLVTHDPSIAARCAQTITIAAGRL 237 LLADEPTGSLDA TGEAVI LMFELN+ERGSTLVLVTHD ++AARC +TITIAAGRL Sbjct: 177 LLADEPTGSLDAATGEAVIELMFELNRERGSTLVLVTHDNAMAARCQRTITIAAGRL 233 >gi|300312088|ref|YP_003776180.1| lipoprotein release ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 236 Score = 191 bits (485), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 101/196 (51%), Positives = 132/196 (67%), Gaps = 2/196 (1%) Query: 40 ILRDVNFNVQAGTTLAIVGASGSGKSTLLGLLAGLDTPSDGTVRIDGVDIFALDEDGRAA 99 +L +V+ +V G +AIVGASGSGKSTLL LL GLDTPS GTV + G D +L E R A Sbjct: 30 VLGNVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTPSSGTVSLLGKDFASLGESERGA 89 Query: 100 LRKHKLGFVFQSFQLLGHLNAVENVMLPLELR--GDADARGKAERMLARVGLGSRLKHYP 157 LR LGFV+Q LL +A++NV +PL +R ADA+ +A ML +VGL R+ H P Sbjct: 90 LRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRADAQEQAREMLGKVGLAQRVTHVP 149 Query: 158 KYLSGGEQQRVALARAFVTEPPLLLADEPTGSLDATTGEAVIRLMFELNKERGSTLVLVT 217 LSGGE+QRVALARA VT P +LADEPTG+LD +T + LM EL++ G+ V+VT Sbjct: 150 GELSGGERQRVALARALVTHPACVLADEPTGNLDRSTADRTFELMIELSRTLGTAFVIVT 209 Query: 218 HDPSIAARCAQTITIA 233 HD +A RC + + ++ Sbjct: 210 HDIELAGRCGRVLRLS 225 >gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 657 Score = 169 bits (427), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 90/204 (44%), Positives = 131/204 (64%), Gaps = 3/204 (1%) Query: 37 ELAILRDVNFNVQAGTTLAIVGASGSGKSTLLGLLAGLDTPSDGTVRIDGVDIFALDEDG 96 ++ +L DVN ++ AG +AIVGASGSGKSTL+ +L LD PS G+ + G + LD D Sbjct: 21 KITVLNDVNLDIHAGELVAIVGASGSGKSTLMNILGCLDKPSAGSYLVAGRETGKLDADE 80 Query: 97 RAALRKHKLGFVFQSFQLLGHLNAVENVMLPLELRG--DADARGKAERMLARVGLGSRLK 154 A LR+ GF+FQ + LL L+A NV +P G R +A +LAR+GL R Sbjct: 81 LAQLRREHFGFIFQRYHLLSDLDATANVEVPSVYAGLEPLQRRQRAGELLARLGLAERSH 140 Query: 155 HYPKYLSGGEQQRVALARAFVTEPPLLLADEPTGSLDATTGEAVIRLMFELNKERGSTLV 214 H P LSGG+QQRV++ARA + ++LADEPTG+LD+ +G+ VI+++ EL+ E G T++ Sbjct: 141 HKPGQLSGGQQQRVSIARALMNGGDVILADEPTGALDSHSGQEVIKILKELHAE-GHTII 199 Query: 215 LVTHDPSIAARCAQTITIAAGRLV 238 +VTHD +A+ + I I G ++ Sbjct: 200 IVTHDMQVASHAQRIIEIKDGVII 223 >gi|300311701|ref|YP_003775793.1| export system ATP-binding subunit [Herbaspirillum seropedicae SmR1] Length = 240 Score = 149 bits (377), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 84/191 (43%), Positives = 115/191 (60%), Gaps = 6/191 (3%) Query: 51 GTTLAIVGASGSGKSTLLGLLAGLDTPSDGTVRIDGVDIFALDEDGRAALRKHKLGFVFQ 110 G L IVG SGSGK+T L +++G+ P G VR++GVD++ L ED A R + +GFVFQ Sbjct: 44 GEILFIVGPSGSGKTTFLSIISGILRPDGGVVRVNGVDLWNLPEDQLADFRLNTIGFVFQ 103 Query: 111 SFQLLGHLNAVENVMLPLELRG--DADARGKAERMLARVGLGSRLKHYPKYLSGGEQQRV 168 + L L + ENV +PL L+ A A L VGL +P LSGGEQQRV Sbjct: 104 DYHLFPRLTSAENVAIPLILKNVDWKSALASANMFLDVVGLKGCGDVFPLKLSGGEQQRV 163 Query: 169 ALARAFVTEPPLLLADEPTGSLDATTGEAVIRLMFE--LNKERGSTLVLVTHDPSIAARC 226 A+ARA V+ PP+L+ DEPT SLD TG +I + E LN R +++VTHDP I+ Sbjct: 164 AIARAIVSSPPILILDEPTASLDGDTGRMIIAFLREKILNPRR--CILIVTHDPRISEFA 221 Query: 227 AQTITIAAGRL 237 + + +A G++ Sbjct: 222 DRIVHMADGKV 232 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 149 bits (375), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 80/213 (37%), Positives = 131/213 (61%), Gaps = 4/213 (1%) Query: 30 TAVSKAGELAILRDVNFNVQAGTTLAIVGASGSGKSTLLGLLAGLDTPSDGTVRIDGVDI 89 T VS AG + L+D++ + G+ I+G SG+GKS+LL + L+ P+ G V +D VD+ Sbjct: 47 TYVSAAGPVQALQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEVDDVDL 106 Query: 90 FALDEDGRAALRKHKLGFVFQSFQLLGHLNAVENVMLPLELRGDADAR--GKAERMLARV 147 LDE ALR+ ++G +FQ F LL +N+ LPL + G A+ + +LA V Sbjct: 107 ATLDETQLVALRR-RIGMIFQHFNLLAAKTVFDNIALPLRVAGVPRAQITQRVHELLALV 165 Query: 148 GLGSRLKHYPKYLSGGEQQRVALARAFVTEPPLLLADEPTGSLDATTGEAVIRLMFELNK 207 GL + YP+ LSGG++QRV +ARA + P +LL DE T +LD T +++++L+ ++N+ Sbjct: 166 GLQDKADSYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLLRDINR 225 Query: 208 ERGSTLVLVTHDPSIAARCA-QTITIAAGRLVE 239 + G T++L+TH+ S+ A + + + GR+ E Sbjct: 226 KLGITIILITHEMSVIREIADRVLVLEQGRVAE 258 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.132 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 588,213 Number of extensions: 23376 Number of successful extensions: 370 Number of sequences better than 1.0e-08: 133 Number of HSP's gapped: 251 Number of HSP's successfully gapped: 146 Length of query: 240 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 157 Effective length of database: 1,226,865 Effective search space: 192617805 Effective search space used: 192617805 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)