BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0016.p (289 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPa... 488 e-139 gi|300310285|ref|YP_003774377.1| branched-chain amino acid ABC t... 269 2e-73 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 220 1e-58 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 220 1e-58 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 215 4e-57 >gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 293 Score = 488 bits (1256), Expect = e-139, Method: Compositional matrix adjust. Identities = 241/292 (82%), Positives = 260/292 (89%), Gaps = 5/292 (1%) Query: 2 TTMKRHITEEVQPMEQERQAN----AGETGDDGVRKIGEVILDLQNISLSFGGVKALTDI 57 TTMKRH++ E+ P A+ A +G R+IGEVILDLQNISLSFGGVKALTDI Sbjct: 3 TTMKRHLSSEILPSGLPPVASPDDEAPAVAANG-RRIGEVILDLQNISLSFGGVKALTDI 61 Query: 58 SFNVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGTIVFRGEQRHSMQPSKVARQGIAR 117 SF+VREHEIRAIIGPNGAGKSSMINVINGVYHPQKG I++RG+ R M PS +ARQGIAR Sbjct: 62 SFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGRILYRGQPRAGMHPSAIARQGIAR 121 Query: 118 TFQNIALFKGMTVLDNIMTGRNTKMHSSFLANAIWWGSARNEEVLHRHKVEEVIDFLEIQ 177 TFQNIALFKGMTVLDNIMTGRNTKM S L+NA+WWG+ARNEE+ HR KVE+VIDFLEIQ Sbjct: 122 TFQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWWGAARNEEIEHRRKVEQVIDFLEIQ 181 Query: 178 HIRKTPVGRLPYGLQKRVELARALAAEPGMLLLDEPMAGMNVEEKQDMCRFILDVNEQFG 237 HIRKTPVGRLPYGLQKRVELARALAAEP MLLLDEPMAGMNVEEKQDMCRFILDVN+QFG Sbjct: 182 HIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEPMAGMNVEEKQDMCRFILDVNDQFG 241 Query: 238 TTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPDEVMANPEVIKAYLGTSH 289 TTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTP+EVM N +VIKAYLGTSH Sbjct: 242 TTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPEEVMGNEDVIKAYLGTSH 293 >gi|300310285|ref|YP_003774377.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 263 Score = 269 bits (687), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 129/252 (51%), Positives = 176/252 (69%) Query: 38 ILDLQNISLSFGGVKALTDISFNVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGTIVF 97 +L L+ +SLSFGGV+AL + + E EI A+IGPNGAGKSS++NV++G+Y P +GT+ Sbjct: 8 VLQLEGVSLSFGGVQALRHVDLALHEREILAVIGPNGAGKSSLVNVMSGLYRPTQGTVSL 67 Query: 98 RGEQRHSMQPSKVARQGIARTFQNIALFKGMTVLDNIMTGRNTKMHSSFLANAIWWGSAR 157 G + + +++ R G+ARTFQN+ALFKG++V DNI+ GR M +SF+ I G AR Sbjct: 68 GGRRLRQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASFVEQIIGLGRAR 127 Query: 158 NEEVLHRHKVEEVIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPGMLLLDEPMAGM 217 E + R + E+++ FL+++ + VG LPYGLQKRVELARAL A P +LLLDEPMAGM Sbjct: 128 RERIDARAQAEQMMAFLDLRAYAERQVGGLPYGLQKRVELARALVARPRLLLLDEPMAGM 187 Query: 218 NVEEKQDMCRFILDVNEQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPDEVMAN 277 V EK +M F+ +QF T I+LIEHD+G+V +SDRVVVL +G KI DG P V + Sbjct: 188 TVTEKSEMADFVRAARDQFDTAILLIEHDIGLVFGLSDRVVVLHHGSKIADGAPAAVRQD 247 Query: 278 PEVIKAYLGTSH 289 VI+AYLG + Sbjct: 248 AAVIEAYLGVAQ 259 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 220 bits (560), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 108/256 (42%), Positives = 158/256 (61%), Gaps = 1/256 (0%) Query: 34 IGEVILDLQNISLSFGGVKALTDISFNVREHEIRAIIGPNGAGKSSMINVINGVYHPQKG 93 + + +L ++++S FGG++AL + + +I +IGPNGAGK++ NVI G+Y P G Sbjct: 1 MSQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTG 60 Query: 94 TIVFRGEQRHSMQPSKVARQGIARTFQNIALFKGMTVLDNIMTGRNTKMHSSFLANAIWW 153 T G+ P +VA+ GIARTFQNI LF MTVL+N+M G + + + Sbjct: 61 TFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTRQNVFGAVFRH 120 Query: 154 GSARNEEVLHRHKVEEVIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPGMLLLDEP 213 +AR EE R K ++++DF+ I K L YG Q+R+E+ARALA +P +L LDEP Sbjct: 121 KAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEP 180 Query: 214 MAGMNVEEKQDMCRFILDVNEQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPDE 273 AGMN EK + ++ + + G TI+LIEHD+ ++M + +R+ VLDYGK I +G P + Sbjct: 181 AAGMNATEKLGLRELLVKIQAE-GKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPAD 239 Query: 274 VMANPEVIKAYLGTSH 289 V NP VI+AYLG H Sbjct: 240 VQKNPAVIEAYLGAGH 255 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 220 bits (560), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 108/256 (42%), Positives = 158/256 (61%), Gaps = 1/256 (0%) Query: 34 IGEVILDLQNISLSFGGVKALTDISFNVREHEIRAIIGPNGAGKSSMINVINGVYHPQKG 93 + + +L ++++S FGG++AL + + +I +IGPNGAGK++ NVI G+Y P G Sbjct: 1 MSQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTG 60 Query: 94 TIVFRGEQRHSMQPSKVARQGIARTFQNIALFKGMTVLDNIMTGRNTKMHSSFLANAIWW 153 T G+ P +VA+ GIARTFQNI LF MTVL+N+M G + + + Sbjct: 61 TFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRH 120 Query: 154 GSARNEEVLHRHKVEEVIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPGMLLLDEP 213 +AR EE R K ++++DF+ I K L YG Q+R+E+ARALA +P +L LDEP Sbjct: 121 KAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEP 180 Query: 214 MAGMNVEEKQDMCRFILDVNEQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPDE 273 AGMN EK + ++ + + G TI+LIEHD+ ++M + +R+ VLDYGK I +G P + Sbjct: 181 AAGMNATEKLGLRELLVKIQAE-GKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPAD 239 Query: 274 VMANPEVIKAYLGTSH 289 V NP VI+AYLG H Sbjct: 240 VQKNPAVIEAYLGAGH 255 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 215 bits (547), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 106/252 (42%), Positives = 169/252 (67%), Gaps = 2/252 (0%) Query: 36 EVILDLQNISLSFGGVKALTDISFNVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGTI 95 + +L++ N+S+ FGG+ A+ +S V+E E+ AIIGPNGAGK+++ N I+G Y P G I Sbjct: 6 KTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSGEI 65 Query: 96 VFRGEQRHSMQPS-KVARQGIARTFQNIALFKGMTVLDNIMTGRNTKMHSSFLANAIWWG 154 + G + QPS +VA+QG+ RTFQNI LFK MTV++N++ ++ +++++ L+ + Sbjct: 66 MLDGAS-IARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTP 124 Query: 155 SARNEEVLHRHKVEEVIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPGMLLLDEPM 214 + R E + +D L + + G L YGLQ+RVE+AR + +P +LLLDEP Sbjct: 125 AYRKSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPA 184 Query: 215 AGMNVEEKQDMCRFILDVNEQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPDEV 274 AG+N +EKQ++ + I + + G ++LIEHDM ++M ISDR++V+++GK I GTP++V Sbjct: 185 AGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQV 244 Query: 275 MANPEVIKAYLG 286 ++ VIKAYLG Sbjct: 245 RSDERVIKAYLG 256 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 885,657 Number of extensions: 36743 Number of successful extensions: 503 Number of sequences better than 1.0e-08: 119 Number of HSP's gapped: 307 Number of HSP's successfully gapped: 133 Length of query: 289 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 205 Effective length of database: 1,222,130 Effective search space: 250536650 Effective search space used: 250536650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)