BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0014.p
         (229 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311883|ref|YP_003775975.1| cyclic nucleotide-binding prote...   415   e-117
gi|300313985|ref|YP_003778077.1| cyclic nucleotide-binding prote...   202   1e-53

>gi|300311883|ref|YP_003775975.1| cyclic nucleotide-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 225

 Score =  415 bits (1067), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 200/222 (90%), Positives = 211/222 (95%)

Query: 6   KTTIQDMLGKSIWARALTSEQLERVQSEIFSRKIPAGGFVCHKGDPVSHWIGVHEGLLKM 65
           +T+I+ ML KSIWA+ALT EQL RV++E+ SRKIPAGG+VC KGD V+HWIGVHEGLLKM
Sbjct: 2   ETSIRRMLAKSIWAQALTEEQLARVETEVVSRKIPAGGYVCRKGDAVTHWIGVHEGLLKM 61

Query: 66  SSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRDSELLYMPKATYLWLLDNSI 125
           SSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALR+SELLYMPKATY+WLLDNSI
Sbjct: 62  SSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRESELLYMPKATYIWLLDNSI 121

Query: 126 PFNRFLVTQLNERLGLFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLELQISQEEV 185
           PFNRFLVTQLNERL LFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGL LQISQEEV
Sbjct: 122 PFNRFLVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEEV 181

Query: 186 GNLSGASRQRANQALQVLEKAGLLKVDYGSITILDLEGLRQF 227
           GNLSG SRQRANQALQVLEKAGLLKVDYGSITI DLEGLRQF
Sbjct: 182 GNLSGTSRQRANQALQVLEKAGLLKVDYGSITINDLEGLRQF 223


>gi|300313985|ref|YP_003778077.1| cyclic nucleotide-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 224

 Score =  202 bits (515), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 96/216 (44%), Positives = 148/216 (68%)

Query: 12  MLGKSIWARALTSEQLERVQSEIFSRKIPAGGFVCHKGDPVSHWIGVHEGLLKMSSVSPE 71
           +L +  W  AL SE      +     +  A  FV  +G+   +WIGVHEGL+K++  + +
Sbjct: 4   LLQQYDWFAALASEHRALAAATTQRVRYAADAFVARRGELSQYWIGVHEGLIKLAVYNID 63

Query: 72  GKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRDSELLYMPKATYLWLLDNSIPFNRFL 131
           G++ + +G+  GGW GEGS++K EPR+YDV+A+R S++L +P  T+  L+  S+PFN F+
Sbjct: 64  GRSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRASQILLVPADTFHCLMAESLPFNAFV 123

Query: 132 VTQLNERLGLFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLELQISQEEVGNLSGA 191
           + QLNER+G FI+ V+ +R+L+ DARVA+ +A LF+P L P     L++SQEE+G L+G 
Sbjct: 124 IGQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLLTGL 183

Query: 192 SRQRANQALQVLEKAGLLKVDYGSITILDLEGLRQF 227
           SRQR NQA++ L + GL+++ Y SI ++DL+GLR F
Sbjct: 184 SRQRVNQAMRRLAELGLVEISYQSIRVVDLDGLRAF 219


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 721,663
Number of extensions: 30386
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 2
Length of query: 229
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,231,600
Effective search space: 181045200
Effective search space used: 181045200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)