BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0013.p
         (150 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311884|ref|YP_003775976.1| two component response regulato...   206   9e-55
gi|300312037|ref|YP_003776129.1| sensory transduction regulatory...    86   1e-18
gi|300311809|ref|YP_003775901.1| two component response regulato...    77   9e-16
gi|300310718|ref|YP_003774810.1| phosphate regulon two-component...    55   3e-09

>gi|300311884|ref|YP_003775976.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 151

 Score =  206 bits (523), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 107/144 (74%), Positives = 125/144 (86%), Gaps = 1/144 (0%)

Query: 7   DMEQMDIMLVDDSPEVAELTRIALDSKKLADKMTWFADAEEAADYMFSDNGFVARKDLHP 66
           D+EQ DI+LVDDSPEVAELTR+AL S+KLADK+TWFADAE A ++ F    +  R+DLHP
Sbjct: 2   DIEQYDIILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGE-YAQRRDLHP 60

Query: 67  RLILLDLHLPLMSGHDFLKIIKSNAATAHIPVVMFSSSDDQRDIVQSYQLGANGYLMKSA 126
            LILLDL+LPLMSGHDFLKIIKSNAAT+HIPVVMFSSSDDQRDI QSY+LGANGY++KS 
Sbjct: 61  YLILLDLNLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKST 120

Query: 127 DPREFIGTVADAGMYWMNRNKVVR 150
           DP+EF+GTV D G+YW NRN+  R
Sbjct: 121 DPKEFMGTVVDTGIYWRNRNRPAR 144


>gi|300312037|ref|YP_003776129.1| sensory transduction regulatory
           protein [Herbaspirillum seropedicae SmR1]
          Length = 140

 Score = 85.9 bits (211), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/136 (39%), Positives = 75/136 (55%), Gaps = 1/136 (0%)

Query: 8   MEQMDIMLVDDSPEVAELTRIALDSKKLADKMTWFADAEEAADYMFSDNGFVARKDLHPR 67
           M +  I++VD SPE  EL R  L   KL     WF DAE AA  +F+        DL P 
Sbjct: 1   MSRPSILMVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADL-PC 59

Query: 68  LILLDLHLPLMSGHDFLKIIKSNAATAHIPVVMFSSSDDQRDIVQSYQLGANGYLMKSAD 127
           LILL+  LP M G + L +++++A T  +PVVMF++S D  D  ++   GAN YL+K  D
Sbjct: 60  LILLEPRLPRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVD 119

Query: 128 PREFIGTVADAGMYWM 143
            R F+  V+     W+
Sbjct: 120 ARAFMELVSQTVRRWL 135


>gi|300311809|ref|YP_003775901.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 154

 Score = 76.6 bits (187), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 74/134 (55%), Gaps = 2/134 (1%)

Query: 9   EQMDIMLVDDSPEVAELTRIALDSKKLADKMTWFADAEEAADYMFSDNGFVARKDLHPRL 68
           + ++I+LV+D    A L    L    L +      D +EA DY+F      +R +L   +
Sbjct: 5   QSVNIILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLFDPQR--SRTELQQLV 62

Query: 69  ILLDLHLPLMSGHDFLKIIKSNAATAHIPVVMFSSSDDQRDIVQSYQLGANGYLMKSADP 128
           +LLD+++P ++G + L+ +K++   + IPV+M +++DD R+I + Y+ G N Y+ K  + 
Sbjct: 63  VLLDVNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPREIGRCYEYGCNVYITKPVEY 122

Query: 129 REFIGTVADAGMYW 142
            +FI  +   G + 
Sbjct: 123 EDFIEAIRRLGFFL 136


>gi|300310718|ref|YP_003774810.1| phosphate regulon two-component
           response regulator transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 230

 Score = 54.7 bits (130), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 11/123 (8%)

Query: 13  IMLVDDSPEVAELTRIALDSKKLADKMTWFADAEEAADYMFSDNGFVARKDLHPRLILLD 72
           I++V+D P +AEL R  +     A   T   D  +A  ++             P ++LLD
Sbjct: 8   ILMVEDEPSIAELLRFTMQGAGFA--TTIATDVAQARKHIAESL---------PHVVLLD 56

Query: 73  LHLPLMSGHDFLKIIKSNAATAHIPVVMFSSSDDQRDIVQSYQLGANGYLMKSADPREFI 132
             LP  SG   L  ++ +  TA +PV+M ++   + D V+    GA+ Y+ K   P+E +
Sbjct: 57  WMLPDSSGLVLLNELRRDQRTASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELV 116

Query: 133 GTV 135
             V
Sbjct: 117 ARV 119


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 372,940
Number of extensions: 11609
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 5
Length of query: 150
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 73
Effective length of database: 1,255,275
Effective search space: 91635075
Effective search space used: 91635075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)