BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0005.p
         (401 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310333|ref|YP_003774425.1| filamentous hemagglutinin outer...   199   3e-52
gi|300309649|ref|YP_003773741.1| hemagglutinin-like protein [Her...   177   2e-45

>gi|300310333|ref|YP_003774425.1| filamentous hemagglutinin outer
           membrane protein [Herbaspirillum seropedicae SmR1]
          Length = 1568

 Score =  199 bits (506), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 137/332 (41%), Positives = 199/332 (59%), Gaps = 22/332 (6%)

Query: 1   VNGQVT-----FSQNGNIFSIT-NSPNAIINWGSFSIAQSEIVRFIQQNANSAVLNRVTG 54
           V GQVT      SQ+GN  +IT +S N  +NW SF+ A  E V FIQ +A++  +NR+  
Sbjct: 57  VGGQVTAGAGSISQSGNTTTITQSSQNLSVNWQSFNTASHETVNFIQPSASAIAVNRIYD 116

Query: 55  QDPSVIMGALQSNGRVYLINPNGILFGAGAQVNVNGLIASTLDIANADFIAGKNKFFAGA 114
            +P+   G L +NG+VYLINPNG+LFGAG+QVNV GL+ASTLD+++A   A   + F+G+
Sbjct: 117 TNPTRFFGQLNANGQVYLINPNGVLFGAGSQVNVGGLVASTLDMSDASLAAAA-RNFSGS 175

Query: 115 TAGSVVNAGEITTPSGGKVFLIAPDVTNSGLITSPQGEVVLAAGHSVQL--ADSSNPAMQ 172
             GS++N G+I+  +GG V  I   V+N G IT+P G V LAAG+ V L  A++S   +Q
Sbjct: 176 GTGSIINQGDISVANGGYVAFIGNTVSNQGNITAPAGTVALAAGNDVTLTFANASLVKLQ 235

Query: 173 VVVSSPSDRAINIGQVIAEGGKI--------GIYGAMINQRGILNANSAQVGETGKIILK 224
           V  ++ ++ + N G ++A+GG +         +  +++N  GI+ A S Q    G+I+L 
Sbjct: 236 VNQNTLNNLSENGGLILADGGAVLMSAGAKDAVLASVVNNTGIIEARSVQ-NVNGRIVLD 294

Query: 225 ASGDTLLEAGSVTSATG--AGQ-GGEVSVLGERVALTGDARIDASGQTGGGTVLVGGDYQ 281
                 +       A+G  AGQ GG V VLG+ V L   + ID SG  GGG+  VGG++ 
Sbjct: 295 GGNLATVSNSGTLDASGKNAGQTGGTVKVLGKEVTLASGSNIDISGDAGGGSAFVGGNFL 354

Query: 282 GKNAAVQNARQTVVGPDASISADAIARGDGGK 313
           G     QNA  T V   A+I+ADA++ G+GG 
Sbjct: 355 GAGPE-QNALNTTVAAGATINADALSNGNGGN 385


>gi|300309649|ref|YP_003773741.1| hemagglutinin-like protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1422

 Score =  177 bits (448), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/273 (41%), Positives = 165/273 (60%), Gaps = 4/273 (1%)

Query: 1   VNGQVTFSQNGNIFSITN-SPNAIINWGSFSIAQSEIVRFIQQNANSAVLNRVTGQDPSV 59
           VNG VTF QNGNI +I   SP AI  + SFSI     V   Q +A +A+L +V+G D S 
Sbjct: 96  VNGNVTFIQNGNILNINQLSPQAIAQFLSFSIGADATVNVNQPSAAAALLAKVSGGDISQ 155

Query: 60  IMGALQSNGRVYLINPNGILFGAGAQVNVNGLIASTLDIANADFIAGKNKFFAGATAGSV 119
           I G L + G V L NPNG++ G    ++    IA++L I+++DF+AGK  F     AG V
Sbjct: 156 IYGKLSATGTVVLYNPNGVVIGPSGSIDAGRFIATSLAISDSDFLAGKLNFARQGNAGIV 215

Query: 120 VNAGEITTPSGGKVFLIAPDVTNSGLITSPQGEVVLAAGHSVQLADSSNPAMQVVVSSPS 179
            N G+I + +GG V+LI   V+NSG+I S QGEV+LAAG +V LAD++ P + V V+  +
Sbjct: 216 DNQGKIQSATGGSVYLIGSSVSNSGIIKSAQGEVILAAGETVTLADTATPGVTVNVTGSA 275

Query: 180 DRAINIGQVIAEGGKIGIYGAMINQRGILNANSAQVGETGKIILKASGDTLLEAGSVTSA 239
               N+G + AE G+IG+   +IN  G++NA+S  V E G+I L+AS +    A S   A
Sbjct: 276 GNVTNLGSITAEAGRIGVAAGLINNSGVINASSV-VREGGRIFLRASQNLTTSASSSIHA 334

Query: 240 TGAGQGGEVSVLGERVALTGDARIDASGQTGGG 272
            G+ +GG ++++ +  A   D  + A+G  G G
Sbjct: 335 DGS-RGGNIALVAQDQAFI-DGDVSATGAPGQG 365


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,166,332
Number of extensions: 48294
Number of successful extensions: 168
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 2
Length of query: 401
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 314
Effective length of database: 1,207,925
Effective search space: 379288450
Effective search space used: 379288450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 132 (55.5 bits)