BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0003.p
         (269 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311656|ref|YP_003775748.1| 4'-phosphopantetheinyl transfer...    56   3e-09

>gi|300311656|ref|YP_003775748.1| 4'-phosphopantetheinyl transferase
           [Herbaspirillum seropedicae SmR1]
          Length = 226

 Score = 56.2 bits (134), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 97/200 (48%), Gaps = 26/200 (13%)

Query: 10  LPHQIDLW-CCFTD--SISDDDLHLYRQSLLSPEERERESRFYFERDRKKFVITRALVRS 66
           LP  I++W  C  D  + +D  L    ++ LS  ER R        DR+++ +  AL+R 
Sbjct: 11  LPPGIEVWQYCLADIETGADAGLLAAARAQLSSAERVRMDALVRPADRRRYALAHALLRL 70

Query: 67  VLSRYAALAPAAWEFVAGSHGRPQVVQDVAQHLCFNLSHTAGLVVMAVSAAQDMGVDTEN 126
           +L+R     P+  +F+ G  G+P++ Q  + H  FNLSH    V++A+S   ++GVD E 
Sbjct: 71  LLARRLDCPPSRLDFMVGPFGKPRLAQCDSLH--FNLSHAGDYVLLALSEQGEVGVDIE- 127

Query: 127 IAIRTAPLDVANSFFSPDEVGGLNAQPFAQRQQR--------FFEYWTLKESWIKARSMG 178
              R   LD          VG L    +++R++R        FF  WT KE+ +KA  +G
Sbjct: 128 --YRDPGLD----------VGSLAELAWSERERRDGQIQPCDFFARWTGKEAVLKALGVG 175

Query: 179 LSIPLDQFSMDLGTEGRVSL 198
           +   L   S+    +G  ++
Sbjct: 176 IGEHLQALSIHPRADGSYAI 195


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 734,405
Number of extensions: 24852
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,222,130
Effective search space: 226094050
Effective search space used: 226094050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)