BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0102.p
         (153 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312325|ref|YP_003776417.1| chemotaxis signal transduction ...   155   1e-39

>gi|300312325|ref|YP_003776417.1| chemotaxis signal transduction
           protein [Herbaspirillum seropedicae SmR1]
          Length = 158

 Score =  155 bits (393), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/149 (53%), Positives = 103/149 (69%)

Query: 2   LFLIFQIGNERYALDAAQVAVVLPPAPCKQVPEAPPWVRGIFSHEGSNVPVLDVSMLALG 61
           LFL+F +G +RYAL  A+VAVVLP  PCKQ+P AP WV G+  +EG +VPV+D+S   LG
Sbjct: 8   LFLLFSLGADRYALPVAEVAVVLPLTPCKQLPGAPAWVAGLLPYEGRHVPVIDLSQRTLG 67

Query: 62  TPAAARLSTRMVLVRYTPEGKTPQLLGLIVERATDTLRCEAADFTGSGLAHDNARYLGPV 121
            PAA R+STR+VLV        P LLGLI+E+ATDTLRC    F  + +AHD   YLGPV
Sbjct: 68  RPAAQRVSTRLVLVHDRSPAGEPALLGLILEQATDTLRCAEQQFVRATVAHDETPYLGPV 127

Query: 122 MRHGDSLIQWVKVADMLDAEVQALLFPEE 150
           M +   L+Q V+V+ +LDA  +A+L+  E
Sbjct: 128 MPYQGGLLQRVQVSALLDAATRAVLYARE 156


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 470,367
Number of extensions: 18520
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 76
Effective length of database: 1,255,275
Effective search space: 95400900
Effective search space used: 95400900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)