BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0100.p
         (129 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312326|ref|YP_003776418.1| methyl-accepting chemotaxis pro...   141   1e-35
gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra...    55   2e-09
gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis tra...    54   6e-09

>gi|300312326|ref|YP_003776418.1| methyl-accepting chemotaxis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 541

 Score =  141 bits (356), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 80/106 (75%), Positives = 95/106 (89%)

Query: 12  VCGYFLLRAITGPMQRLMGILDVMRAGDFSQRLYFERRDEFSHLAAGFNRMTDELTALVG 71
           VCG+FL+RAI  P+Q+LMGILD MR+GDFS+R+  +R DEF HL +GF+RMTDELTALV 
Sbjct: 203 VCGFFLMRAINEPLQKLMGILDYMRSGDFSRRVALDRNDEFGHLGSGFDRMTDELTALVS 262

Query: 72  QAQKSSAQVSTSVTEIAATSRQQQATASETAATTTEIGVTSREIFA 117
           QAQKSSA+V+TSVTEIAAT+RQQQATA+ETAATTTEIG TSREI +
Sbjct: 263 QAQKSSARVATSVTEIAATARQQQATAAETAATTTEIGATSREIHS 308


>gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 581

 Score = 54.7 bits (130), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 7/116 (6%)

Query: 6   AXAAAVVCGYFLLRAITGPMQRLMGILDVMRAGDFSQRLYFERRDEFSHLAAGFNRMTDE 65
           A  AA++ GY + R+I  P+   + + + + AGD + R+    RDE   L     +M D 
Sbjct: 202 AVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRIEPHSRDETGQLMQALRKMNDN 261

Query: 66  LTALVGQAQKSSAQVSTSVTEIA-------ATSRQQQATASETAATTTEIGVTSRE 114
           L  +V   ++ +  ++T+  EIA       A + QQ  +  ETA+   E+  T R+
Sbjct: 262 LIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEETASAMEEMTSTVRQ 317


>gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 596

 Score = 53.5 bits (127), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 7/107 (6%)

Query: 15  YFLLRAITGPMQRLMGILDVMRAGDFSQRLYFERRDEFSHLAAGFNRMTDELTALVGQAQ 74
           + L RAI  PMQR +   D + +GD ++ ++   R+E   L  G  RM + L+  V   +
Sbjct: 207 WSLRRAIGEPMQRALRHFDAIASGDLTEAVHVHSRNEMGQLLEGLKRMQESLSRTVQAVR 266

Query: 75  KSSAQVSTSVTEIAA-----TSR--QQQATASETAATTTEIGVTSRE 114
             S  +ST+  EIA+     +SR  QQ A+  ETA++  E+  T + 
Sbjct: 267 SGSDAISTATREIASGNLDLSSRTEQQAASLEETASSMEELTSTVKH 313


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.126    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 246,998
Number of extensions: 7784
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 5
Length of query: 129
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 54
Effective length of database: 1,264,745
Effective search space: 68296230
Effective search space used: 68296230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)