BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0099.p
         (182 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312326|ref|YP_003776418.1| methyl-accepting chemotaxis pro...   232   1e-62

>gi|300312326|ref|YP_003776418.1| methyl-accepting chemotaxis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 541

 Score =  232 bits (592), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 119/180 (66%), Positives = 147/180 (81%), Gaps = 1/180 (0%)

Query: 1   MKNWTIKQRILGSFAVILILMAVMAGIAYTRLAKIDDEATSLRQDSTPGLYYSTMINAAW 60
           MKNWTIKQRILGSFA+IL+LMA+MAGI+   L +I++ AT+LRQDSTPGLYYSTMINAAW
Sbjct: 1   MKNWTIKQRILGSFALILLLMALMAGISAVNLGRIENGATALRQDSTPGLYYSTMINAAW 60

Query: 61  YENLLLGQQIAQIDDTEATRQADIALLRANSERLNHLQEEYEKTIFSPRDRALFDQFKQA 120
           YENLL+ QQIAQID  EA RQAD+ALLR N ERL+ LQE+Y+KTIFS  DR LFDQFK+ 
Sbjct: 61  YENLLMSQQIAQIDTNEAERQADLALLRRNGERLDRLQEDYDKTIFSDSDRKLFDQFKET 120

Query: 121 RMGYRQIQQDILRMDLSSPNAAVYKIISDQLRPAWRTGYVLTQKMVEINKTISDDSAHRI 180
           R  YR +  ++L+MD  S  A + K+ ++Q+RP WR GY LTQ+MV+ NK+I+DD+A RI
Sbjct: 121 RQKYRAMISEVLKMDF-SQRAPIDKMFNEQIRPQWRQGYQLTQRMVDTNKSIADDAASRI 179


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 497,711
Number of extensions: 17390
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 2
Length of query: 182
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,241,070
Effective search space: 126589140
Effective search space used: 126589140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)