BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0097.p
         (175 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310920|ref|YP_003775012.1| integral membrane protein [Herb...   219   1e-58

>gi|300310920|ref|YP_003775012.1| integral membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 178

 Score =  219 bits (557), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 121/181 (66%), Positives = 148/181 (81%), Gaps = 9/181 (4%)

Query: 1   MLRSETLFGKRETNSPNSPFSANNNL------TQPGVSNVSKTATSTSASSGSQSNNNSG 54
           MLRSE+LFGKRET S NSPFS+ ++       T   V++V+K A   S+ S + +   + 
Sbjct: 1   MLRSESLFGKRETTSTNSPFSSASSNGSTSTPTGGNVTSVNKPAQYPSSVS-TPAPAQAA 59

Query: 55  SNEMGSKLIVGPNIKLKGVEINDCDTLVVEGRVEATMDSRVIQIAEKGAFKGSAEIDLAE 114
           + E GSKL VGPNIK+KG EI DCDTLVVEG+V+AT++ RV+QIAE+GAFKGSAEIDLAE
Sbjct: 60  AEESGSKLTVGPNIKVKG-EIEDCDTLVVEGKVQATINCRVVQIAERGAFKGSAEIDLAE 118

Query: 115 IRGDFDGDLTVRQKLVIYSSGRVSGKIRYGKLVIEEGGQLSGDVQVGGSAEQRELLQAKT 174
           IRG+FDG+LTVRQKLVIY+SG+V+GKIRYGKLVIEEGGQL+GD+QVGG  EQ+ELLQ KT
Sbjct: 119 IRGEFDGELTVRQKLVIYASGKVTGKIRYGKLVIEEGGQLAGDLQVGGGHEQKELLQ-KT 177

Query: 175 A 175
           A
Sbjct: 178 A 178


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.307    0.127    0.334 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 386,872
Number of extensions: 13722
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,245,805
Effective search space: 119597280
Effective search space used: 119597280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 127 (53.5 bits)