BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0095.p
         (368 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312642|ref|YP_003776734.1| transmembrane protein [Herbaspi...   432   e-122

>gi|300312642|ref|YP_003776734.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 363

 Score =  432 bits (1112), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/368 (64%), Positives = 286/368 (77%), Gaps = 5/368 (1%)

Query: 1   MSDTFDPPGQPEPNQPVSFASLLPAQTGPSVEAFSFSGRGSEYFRIWIVNLLLSVVTFGI 60
           M++  D P Q  P     F+++L        EAFSFSGRG EYFRIWIVNLLLS+VT GI
Sbjct: 1   MNEPSDLPSQATP----PFSTVLNTAAPVKPEAFSFSGRGGEYFRIWIVNLLLSIVTLGI 56

Query: 61  YSAWAKVRRLRYFYDNTTVAGTSFEYHGNPIAILKGRIVAVVLLFGYQFAFSYNPLLGMI 120
           YSAWAKVRRLRYFYDNT+VAG SF+YHGNPIAILKGRI+AVVLL  Y FA + +PLLG+ 
Sbjct: 57  YSAWAKVRRLRYFYDNTSVAGGSFDYHGNPIAILKGRIIAVVLLAVYNFAGAASPLLGLA 116

Query: 121 ALLVFALAVPWLIWRSLQFKLYNSSYRGIRFGFRGNAGGAYKAYLLLPVLTVLTLYLLTP 180
           A L+  LA PWL+WRSLQFKLYN+SYRGIRFGFRG+ GGA + +L+ P+L  ++L LL P
Sbjct: 117 AALLLVLAGPWLLWRSLQFKLYNTSYRGIRFGFRGSLGGAARNFLMWPMLASISLGLLAP 176

Query: 181 FTHQRIKRFQHNESRFGASHFSFDGSVGSFYKTYLIGFGIYLAGFIAIVVALGGTALIAA 240
             +QR KR+QH+E+RFGA+HFSF GSVG+FYKT+LIG G++L G I I V  GG  LI  
Sbjct: 177 LAYQRFKRYQHSEARFGATHFSFHGSVGAFYKTFLIGLGLWLGGIIVIFVGFGGITLIQM 236

Query: 241 GRDFGAHSVFSFMLLFFALYAWTFLMYPLFLTLLQNLIWNHTRLGEHRFHSAMRWPRMMF 300
               G  +VFS ML+  ALYAWTFL  PL++TLLQNL+WN+TRLGEHRF S MRW R  F
Sbjct: 237 VHA-GTTAVFSLMLMVLALYAWTFLALPLWMTLLQNLVWNNTRLGEHRFQSDMRWGRTAF 295

Query: 301 IAFTNIVGIVATLGLFTPFAQIRALRYKIESMSLHAAGNLDEFIADNAAQGSAAGEGLSD 360
           I FTN++G+V TLGL+TPFAQIR +RY+IES++L  A +LD+F+A + A GSA GEGL D
Sbjct: 296 IVFTNVLGVVFTLGLYTPFAQIRMMRYRIESLTLLPASSLDDFVASSEAHGSATGEGLGD 355

Query: 361 LLDFDLSL 368
           LLDFDLS+
Sbjct: 356 LLDFDLSM 363


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.143    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,145,763
Number of extensions: 46869
Number of successful extensions: 219
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 281
Effective length of database: 1,207,925
Effective search space: 339426925
Effective search space used: 339426925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)